View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9630H-LTR4-TNT-insertion-5 (Length: 444)
Name: F9630H-LTR4-TNT-insertion-5
Description: F9630H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9630H-LTR4-TNT-insertion-5 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 123 - 435
Target Start/End: Original strand, 18335988 - 18336300
Alignment:
| Q |
123 |
tgaattgagaatatggtaaagtagctccgggatggggaactacccctttgatgggtattgcaatggctctatttgcggtatttctctctattattttaga |
222 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18335988 |
tgaattcagaatatggtaaagtagctccgggatggggaactacccctttgatgggtattgcaatggctctatttgcggtatttctctctattattttaga |
18336087 |
T |
|
| Q |
223 |
gatttataattcgtccattttactggaccaaatttcgaattagagaattagattcacaagaaccaactaactagtttttcaatagaaagtaaagtttagc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18336088 |
gatttataattcgtccattttactggaccaaatttcgaattagagaattagattcacaagaaccaactaactagtttttcaatagaaagtaaagtttagc |
18336187 |
T |
|
| Q |
323 |
ttagcatttaggtcgttgatttttagaccattccatttttatttggtagttcgaccgcgaaacctctttgtttctgtatttccggaatatgagtgtgtga |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18336188 |
ttagcatttaggtcgttgatttttagaccattccatttttatttggtagttcgaccgcgaaacttctttgtttctgtatttccggaatatgagtgtgtga |
18336287 |
T |
|
| Q |
423 |
cttgttacaattg |
435 |
Q |
| |
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||||||||||||| |
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| T |
18336288 |
cttgttacaattg |
18336300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 123 - 435
Target Start/End: Complemental strand, 26615382 - 26615070
Alignment:
| Q |
123 |
tgaattgagaatatggtaaagtagctccgggatggggaactacccctttgatgggtattgcaatggctctatttgcggtatttctctctattattttaga |
222 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
26615382 |
tgaattcagaatatggtaaagtagctccgggatggggaactacccctttgatgggtattgcaatggctctatttacgatatttctctctattattttaga |
26615283 |
T |
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| Q |
223 |
gatttataattcgtccattttactggaccaaatttcgaattagagaattagattcacaagaaccaactaactagtttttcaatagaaagtaaagtttagc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26615282 |
gatttataattcgtccattttactggaccaaatttcgaattagagaattagattcacaagaaccaactaactagtttttcaatagaaagtaaagtttagc |
26615183 |
T |
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| Q |
323 |
ttagcatttaggtcgttgatttttagaccattccatttttatttggtagttcgaccgcgaaacctctttgtttctgtatttccggaatatgagtgtgtga |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
26615182 |
ttagcatttaggtcgttgatttttagaccattccatttttatttggtagttcgaccgcgaaacttctttgtttctgtatttctggaatatgagtgtgtga |
26615083 |
T |
|
| Q |
423 |
cttgttacaattg |
435 |
Q |
| |
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||||||||||||| |
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| T |
26615082 |
cttgttacaattg |
26615070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 37007081 - 37006964
Alignment:
| Q |
11 |
ccaacaactctatttgtgatctacaacgtatcgaatctaatagagcacgtaaagtcaggattatcaatcagaacatggtggaacaaccaaagaatgggaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37007081 |
ccaacaactctatttgtgatctacaacgtatcgaatctaatagagcacgtaaagtcaggattatcaatcagaacatggtggaacaaccaaagaatgggaa |
37006982 |
T |
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| Q |
111 |
gaataacaaccatgaatt |
128 |
Q |
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|||||||||||||||||| |
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| T |
37006981 |
gaataacaaccatgaatt |
37006964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 31079180 - 31079253
Alignment:
| Q |
231 |
attcgtccattttactggaccaaatttcgaattagagaattagattcacaagaaccaactaactagtttttcaa |
304 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31079180 |
attcgtccattttactggaccaaatttctaattagagaattagattcacaagaaccaactaactagtttttcaa |
31079253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 593262 - 593168
Alignment:
| Q |
136 |
tggtaaagtagctccgggatggggaactacccctttgatgggtattgcaatggctctatttgcggtatttctctctattattttagagatttata |
230 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||| |
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| T |
593262 |
tggtaaagtagctccgggatggggaactacctctttgatgggtattgcaatggctctatttgttatatgtctctccactattttagagatttata |
593168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 271236 - 271354
Alignment:
| Q |
131 |
gaatatggtaaagtagctccgggatggggaactacccctttgatgggtattgcaatggctctatttgcggtatttctctctattattttagagatttata |
230 |
Q |
| |
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|||||||| ||||| || ||||| ||||| ||||| ||||| ||||| | ||||||||| |||| || |||| || ||||| |||||||| ||||||| |
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| T |
271236 |
gaatatgggaaagtcgccccgggttgggggactactccttttatgggggtcgcaatggctttattcgctatattcctatctatcattttagaaatttata |
271335 |
T |
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| Q |
231 |
attcgtccattttactgga |
249 |
Q |
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|||| |||||||||||||| |
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| T |
271336 |
attcttccattttactgga |
271354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 435
Target Start/End: Original strand, 271458 - 271527
Alignment:
| Q |
366 |
tggtagttcgaccgcgaaacctctttgtttctgtatttccggaatatgagtgtgtgacttgttacaattg |
435 |
Q |
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|||||||||||||||| || | |||||||| |||| || |||||||||||||||||||||||| ||||| |
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| T |
271458 |
tggtagttcgaccgcggaatttttttgtttcggtatctctggaatatgagtgtgtgacttgttagaattg |
271527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 19340373 - 19340330
Alignment:
| Q |
270 |
ttagattcacaagaaccaactaactagtttttcaatagaaagta |
313 |
Q |
| |
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||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
19340373 |
ttagattcacaagtatcaactaactagtttttcaatagaaagta |
19340330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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