View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9630H-LTR4-TNT-insertion-7 (Length: 169)
Name: F9630H-LTR4-TNT-insertion-7
Description: F9630H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9630H-LTR4-TNT-insertion-7 |
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| [»] scaffold1099 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 55824564 - 55824409
Alignment:
| Q |
10 |
ctaatgatcttttcaacatgctctcaaagttgttcactataccaactctattggtcctgttggatcaagtaacagtggaaactaaaaggtaccttaatgt |
109 |
Q |
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| T |
55824564 |
ctaatgatcttttcaacatgctctcaaagttgttcactataccaactctattggtcctgttggatcaagtaacagtggaaactaaaaggtaccttaatgt |
55824465 |
T |
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| Q |
110 |
gattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggta |
165 |
Q |
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| T |
55824464 |
gattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggta |
55824409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 9e-81
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 56150417 - 56150572
Alignment:
| Q |
10 |
ctaatgatcttttcaacatgctctcaaagttgttcactataccaactctattggtcctgttggatcaagtaacagtggaaactaaaaggtaccttaatgt |
109 |
Q |
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| T |
56150417 |
ctaatgatcttttcaacatgctctcaaagttgttcactataccaactctattggtcctgttggatcaagtagcagtggaaactaaaaggtaccttaatgt |
56150516 |
T |
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| Q |
110 |
gattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggta |
165 |
Q |
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| T |
56150517 |
gattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggta |
56150572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 9e-81
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 56152888 - 56153043
Alignment:
| Q |
10 |
ctaatgatcttttcaacatgctctcaaagttgttcactataccaactctattggtcctgttggatcaagtaacagtggaaactaaaaggtaccttaatgt |
109 |
Q |
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| T |
56152888 |
ctaatgatcttttcaacatgctctcaaagttgttcactataccaactctattggtcctgttggatcaagtagcagtggaaactaaaaggtaccttaatgt |
56152987 |
T |
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| Q |
110 |
gattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggta |
165 |
Q |
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| T |
56152988 |
gattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggta |
56153043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1099 (Bit Score: 35; Significance: 0.00000000006; HSPs: 1)
Name: scaffold1099
Description:
Target: scaffold1099; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 35 - 1
Alignment:
| Q |
10 |
ctaatgatcttttcaacatgctctcaaagttgttc |
44 |
Q |
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| T |
35 |
ctaatgatcttttcaacatgctctcaaagttgttc |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 9888204 - 9888273
Alignment:
| Q |
89 |
aactaaaaggtaccttaatgtgattcaaggccgagagcttcaggccagtcatatctaaaacctttacaca |
158 |
Q |
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| T |
9888204 |
aactaaaaactaccttaatctgattcagggctgacagcttcagaccagtcatatccaaaaccttcacaca |
9888273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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