View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9630H-LTR4-TNT-insertion-9 (Length: 343)
Name: F9630H-LTR4-TNT-insertion-9
Description: F9630H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9630H-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 46307924 - 46307598
Alignment:
| Q |
7 |
agcctcaaagaaaggagcccaaatgtcgtaaagtgaatcatcagatcaaaggaaattgacgcgatttttatgagagataaaaggtaactttgaaaatttt |
106 |
Q |
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| T |
46307924 |
agcctcaaagaaaggagcccaaatgtcgtaaagtgaatcatcagatcaaaggaaattgacgcgatttttatgagagataaaaggtaactttgaaaatttt |
46307825 |
T |
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| Q |
107 |
ggaatagttgaaatttgacaggaatgagattgaaattttgcacgtaatgtgaaaggaaatttatctgtaacaattttgagtatatgatcagacaagtgac |
206 |
Q |
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| T |
46307824 |
ggaatagttgaaatttgacaggaatgagattgaaattttgcacgtaatgtgaaaggaaatttatctgtaacaattttgagtatatgatcagacaagtgac |
46307725 |
T |
|
| Q |
207 |
caagtctataatctagtgctcattggttggccatataatagtttatagaagtacaaggaaaactaaactcttcatttgaactaatgcaactacaatttgg |
306 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46307724 |
caagtctataatctaatgctcattggttggccatataatagtttatagaagtacaaggaaaactaaactcttcatttgaactaatgcaactacaatttgg |
46307625 |
T |
|
| Q |
307 |
taaggaaacattacacaaagcagatta |
333 |
Q |
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||||||||||||||||||||||||||| |
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| T |
46307624 |
taaggaaacattacacaaagcagatta |
46307598 |
T |
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