View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9645H-LTR4-TNT-insertion-10 (Length: 194)
Name: F9645H-LTR4-TNT-insertion-10
Description: F9645H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9645H-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 811383 - 811557
Alignment:
| Q |
10 |
tactagtggaatcacattcacctcctttgccatcatgaaaatgaagaacaaaacataactgagaagaggcttgtaataatgtacataaaatattttgata |
109 |
Q |
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| T |
811383 |
tactagtggaatcacattcacctcctttgccatcatgaaaatgaagaacaaaacataactgagaagaggcttgtaataatgtacataaaatattttgata |
811482 |
T |
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| Q |
110 |
tcatcatgaattatcccattgcttttttacaatcttcttttacagattctctacatcatttttacactttcatta |
184 |
Q |
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| T |
811483 |
tcatcatgaattatcccattgcttttttacaatcttcttttacagattctctacatcatttttacactttcatta |
811557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 47067066 - 47067034
Alignment:
| Q |
10 |
tactagtggaatcacattcacctcctttgccat |
42 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
47067066 |
tactagtggaatcacattcaccttctttgccat |
47067034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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