View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9645H-LTR4-TNT-insertion-11 (Length: 465)
Name: F9645H-LTR4-TNT-insertion-11
Description: F9645H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9645H-LTR4-TNT-insertion-11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 455
Target Start/End: Original strand, 51402313 - 51402760
Alignment:
| Q |
8 |
gtaactaacaccagtgtccttttttcttagtatcgatcgatcgatcattcataataaccagcaacgttaatttttgaagcgatctgaataatcttggtgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51402313 |
gtaactaacaccagtgtccttttttcttagtatcgatcgatcgatcattcataataaccagcaacgttaatttttgaagcgatctgaataatcttggtgg |
51402412 |
T |
|
| Q |
108 |
tgctgccgcgacaacatggcgacgcctaatgtgacatgtcctgcaccgatgaaagccacgtctaatggtgctttccaacacgaaaatcctctcgattatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51402413 |
tgctgccgcgacaacatggcgacgcctaatgtgacatgtcctgcaccgatgaaagccacgtctaatggtgctttccaacacgaaaatcctctcgattatg |
51402512 |
T |
|
| Q |
208 |
cacttccgttgttgattcttcagatatgtgtggttgtcacgttcactagatgtattgcatacctttgcaaaccactcaaacaacctcgagtcattgcaga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51402513 |
cacttccgttgttgattcttcagatatgtgtggttgtcacgttcactagatgtattgcatacctttgcaaaccactcaaacaacctcgagtcattgcaga |
51402612 |
T |
|
| Q |
308 |
aatcattgtaagttttcgtcctttgtattgttgttttatccttgaaagtcccttaatttgatggttatagtttatatttgagtttccatgcaataagtta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51402613 |
aatcattgtaagttttcgtcctttgtattgttgttttatccttgaaagtcccttaatttgatggttatagtttatatttgagtttccatgcaataagtta |
51402712 |
T |
|
| Q |
408 |
gtgagacaatgaatatggcagtttgacatgatcgacaaattataatta |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51402713 |
gtgagacaatgaatatggcagtttgacatgatcgacaaattataatta |
51402760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 29984419 - 29984241
Alignment:
| Q |
141 |
acatgtcctgcaccgatgaaagccacgtctaatggtgctttccaacacgaaaatcctctcgattatgcacttccgttgttgattcttcagatatgtgtgg |
240 |
Q |
| |
|
|||||||| |||| ||||| ||||| |||||||| || || ||||| |||||||| | |||||||||||||| || || ||| | ||||||||| ||| |
|
|
| T |
29984419 |
acatgtccaccaccaatgaaggccacttctaatggggcatttcaacatgaaaatcccatggattatgcacttcccttattaattgtacagatatgtttgg |
29984320 |
T |
|
| Q |
241 |
ttgtcacgttcactagatgtattgcatacctttgcaaaccactcaaacaacctcgagtcattgcagaaatcattgtaag |
319 |
Q |
| |
|
| ||| | || || ||| ||||||| |||||||| || || | ||||||| |||| ||||||||| |||||||||| |
|
|
| T |
29984319 |
tggtcgcttttacaagactcattgcatttctttgcaagcctcttagacaacctagagttattgcagaagtcattgtaag |
29984241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 938 times since January 2019
Visitors: 1117