View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9645H-LTR4-TNT-insertion-12 (Length: 583)
Name: F9645H-LTR4-TNT-insertion-12
Description: F9645H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9645H-LTR4-TNT-insertion-12 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 574
Target Start/End: Complemental strand, 41483258 - 41482692
Alignment:
| Q |
8 |
tgaacatgcctgatgacttgtgcattcgcatttgatcagttataacttataagcaaacatgcaataggagaagatgccagctgaattatgatggaatctt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41483258 |
tgaacatgcctgatgacttgtgcattcgcatttgatcagttataacttataagcaaacatgcaataggagaagatgccagctgaattatgatggaatctt |
41483159 |
T |
|
| Q |
108 |
ctatgttatcgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcagtgaagtttgaaagaaaagggttcatagagataaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
41483158 |
ctatgttatcgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcagtgaagtttgaaagaaaagggttcatatagataaca |
41483059 |
T |
|
| Q |
208 |
ttgtgtgtttaccgatgttggcttgtttagagtgctgacaatgaccaatgacaacaaagtatgattctaacaacacctcaagttcttctatattttctgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41483058 |
ttgtgtgtttaccgatgttggcttgtttagagtgctgacaatgaccaatgacaacaaagtatgattctaacaacacctcaagttcttctatattttctgt |
41482959 |
T |
|
| Q |
308 |
tttactttcagatctcctcatgatctcgtgttgattcctagcaatgctcaacctcttctaaagcttccgagaatcaggtggggatgaaacgagagagact |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41482958 |
tttactttcagatctcctcatgatctcgtgttgattcctagcaatgctcaacctcttctaaagcttccgagaatcaggtggggatgaaacgagagagact |
41482859 |
T |
|
| Q |
408 |
ggagaagagaaggatgcaccatcaactgatctatatatccaaccatagctcttctcgataaggtacatttcagccatatcaccatcatcatccgtaagct |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41482858 |
ggagaagagaaggatgcaccatcaactgatctatatatccaaccatagctcttctcgataaggtacatttcagccatatcaccatcatcatccgtaagct |
41482759 |
T |
|
| Q |
508 |
attctatttcgtccctaatctaacacacccacaatattaactcagctaatatgacacctatcaattg |
574 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41482758 |
attctatttcgtctctaatctaacacacccacaatattaactcagctaatatgacacctatcaattg |
41482692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 76 - 336
Target Start/End: Complemental strand, 41486294 - 41486044
Alignment:
| Q |
76 |
agaagatgccagctgaattatgatggaatcttctatgttatcgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcagtga |
175 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
41486294 |
agaagacgccagctgaat---gatggaatcttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtga |
41486198 |
T |
|
| Q |
176 |
agtttgaaagaaaagggttcatagagataacattgtgtgtttaccgatgttggcttgtttagagtgctgacaatgaccaatgacaacaaagtatgattct |
275 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| |
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| T |
41486197 |
agttggaaagaaaagggttcatgaagataacattgtgtgtttaccgatgttagcttgtttagagtgccga-------caatgacaacaaagtatgattct |
41486105 |
T |
|
| Q |
276 |
aacaacacctcaagttcttctatattttctgttttactttcagatctcctcatgatctcgt |
336 |
Q |
| |
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|| || | |||| ||||||||||||||| ||| ||||| ||||| ||||||||| |||||| |
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|
| T |
41486104 |
aataatatctcaggttcttctatattttttgtattactctcagaactcctcatgctctcgt |
41486044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 457 - 560
Target Start/End: Complemental strand, 41485910 - 41485807
Alignment:
| Q |
457 |
tcttctcgataaggtacatttcagccatatcaccatcatcatccgtaagctattctatttcgtccctaatctaacacacccacaatattaactcagctaa |
556 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| |||||| |||||| |||||||| || |||| || || || ||| |||||||||| ||||| |
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| T |
41485910 |
tcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctctaacctgactcatccaaaatattaacttggctaa |
41485811 |
T |
|
| Q |
557 |
tatg |
560 |
Q |
| |
|
|||| |
|
|
| T |
41485810 |
tatg |
41485807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 41486396 - 41486329
Alignment:
| Q |
12 |
catgcctgatgacttgtgcattcgcatttgatcagttataacttataagcaaacatgcaataggagaa |
79 |
Q |
| |
|
|||| |||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
41486396 |
catgtctgatgacttgtgcgttctcgtttgatcagttataacttataagcaaatgtgcaataggagaa |
41486329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 96 - 455
Target Start/End: Original strand, 45384618 - 45384977
Alignment:
| Q |
96 |
tgatggaatcttctatgttatcgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcagtgaagtttgaaagaaaagggttc |
195 |
Q |
| |
|
||||| ||||||| ||| ||| || ||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
45384618 |
tgatgaaatcttcagtgtcatcaatgtattcttttaactgaaacaagaaaatggaaacggtgatagataaactgcggtgaagttggaaagaaaagggtta |
45384717 |
T |
|
| Q |
196 |
ataga-gataacattgtg--tgtttaccgatgttggcttgtttagagtgctgacaatgaccaatgacaacaaagtatgattctaacaacacctcaagttc |
292 |
Q |
| |
|
||| | ||||||| || | ||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||| |
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|
| T |
45384718 |
atataagataacagtgcgggtgtttaccgatgtcaacttgtttagagtgctgtcaat-------gacaacaaagtatgcttctaacaacatctcaagttc |
45384810 |
T |
|
| Q |
293 |
ttctatattttctgttttactttcagatctcctcatgatctcgtgttgattcctagcaatgctcaacctcttctaaagcttcc------gagaatcaggt |
386 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||| |||||||| || |||||||||||||||| ||||||| |||| ||| |||| || ||| |
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|
| T |
45384811 |
ttctatattttcattattactttcagaactcctcatgctctcgtgtcgactcctagcaatgctcaagctcttctcaagcctccgagagtgagagtcgggt |
45384910 |
T |
|
| Q |
387 |
ggggatgaaacgagagagactggagaagagaaggatgcaccatcaactgatctatatatccaaccatag |
455 |
Q |
| |
|
|| |||||||| ||||||||||| ||||| ||||||||||||||| | || ||||||||||||||| |
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|
| T |
45384911 |
ggtgatgaaacaggagagactggaagagagatggatgcaccatcaaccggtc--tatatccaaccatag |
45384977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 457 - 574
Target Start/End: Original strand, 45385014 - 45385134
Alignment:
| Q |
457 |
tcttctcgataaggtacatttcagccatatcaccatcatcatccgtaagctattctatttcgtccctaatctaacac---acccacaatattaactcagc |
553 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| || |||| | ||||||||||| ||||| |
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|
| T |
45385014 |
tcttctcggtaaggtacatttcagccatatcaccatcatcatccataagctgctctatttcgtctctaacctgacacattatccacaatattagctcaga |
45385113 |
T |
|
| Q |
554 |
taatatgacacctatcaattg |
574 |
Q |
| |
|
|||||| ||||||||||| |
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|
| T |
45385114 |
aaatatggttcctatcaattg |
45385134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 254 - 443
Target Start/End: Original strand, 5671609 - 5671801
Alignment:
| Q |
254 |
aatgacaacaaagtatgattctaacaacacctcaagttcttctatattttctgttttactttcagatctcctcatgatctcgtgttgattcctagcaatg |
353 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||||| ||||| |||| | ||||||||||| ||| ||||| || |||| | ||||||||| || |
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|
| T |
5671609 |
aatgacaacaaagtatgct-ctaacaacatctcaagttcttatatatgttctatattactttcagaactcatcatgctcatgtgtcggttcctagcagtg |
5671707 |
T |
|
| Q |
354 |
ctcaacctcttctaaagcttccgagaatcaggtgg--gg--atgaaacgagagagactggagaagagaaggatgcaccatcaactgatctatat |
443 |
Q |
| |
|
||||| ||| ||| || | |||||||||| ||||| || |||||| | |||||||||| || ||| ||||| |||||||||| ||||||| |
|
|
| T |
5671708 |
ctcaagctcctctcaaccctccgagaatctggtggccggtaatgaaatggaagagactggataaaagatggatgtgccatcaactggtctatat |
5671801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 5671481 - 5671549
Alignment:
| Q |
122 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcagtgaagtttgaaagaaaag |
190 |
Q |
| |
|
||||||||||||||||||| |||| | |||| ||||||||||||||| |||||||| |||||||||| |
|
|
| T |
5671481 |
tattcttttaactgaaacatgaaaggaaaaacgatgatagataaactgcggtgaagttggaaagaaaag |
5671549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 388
Target Start/End: Original strand, 5681106 - 5681239
Alignment:
| Q |
254 |
aatgacaacaaagtatgat-tctaacaacacctcaagttcttctatattttctgttttactttcagatctcctcatgatctcgtgttgattcctagcaat |
352 |
Q |
| |
|
||||||||||||||| || |||||||||| ||||||||||| ||||| |||| | ||||||||||| ||| ||||| || |||| | ||||||||| | |
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|
| T |
5681106 |
aatgacaacaaagta--atgtctaacaacatctcaagttcttatatatgttctatattactttcagaactcatcatgctcatgtgtcggttcctagcagt |
5681203 |
T |
|
| Q |
353 |
gctcaacctcttctaaagcttccgagaatcaggtgg |
388 |
Q |
| |
|
||||| ||| ||| || | |||||||||| ||||| |
|
|
| T |
5681204 |
gctcatgctcctctcaaccctccgagaatctggtgg |
5681239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 5680978 - 5681045
Alignment:
| Q |
122 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcagtgaagtttgaaagaaaa |
189 |
Q |
| |
|
|||||||||||||||||||||||| | |||| | ||||||||||||| |||||||| ||||||||| |
|
|
| T |
5680978 |
tattcttttaactgaaacaagaaaggaaaaacgataatagataaactgcggtgaagttggaaagaaaa |
5681045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 5685591 - 5685643
Alignment:
| Q |
155 |
gtgatagataaactgcagtgaagtttgaaagaaaagggttcatagagataaca |
207 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||||| || |||||||| |
|
|
| T |
5685591 |
gtgatagataaactgcggtgaatttggaaagaaaagggttaatgtagataaca |
5685643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 346 - 436
Target Start/End: Original strand, 20434317 - 20434405
Alignment:
| Q |
346 |
tagcaatgctcaacctcttctaaagcttccgagaatcaggtggggatgaaacgagagagactggagaagagaaggatgcaccatcaactga |
436 |
Q |
| |
|
||||||| ||||| ||||||| |||| ||||||||||| |||| |||||||| | ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
20434317 |
tagcaatactcaagctcttctcaagcctccgagaatcaagtggcgatgaaac--gggagaccggagaagagaatgatgcaccatcaactga |
20434405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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