View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9645H-LTR4-TNT-insertion-7 (Length: 217)
Name: F9645H-LTR4-TNT-insertion-7
Description: F9645H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9645H-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 34257026 - 34256832
Alignment:
| Q |
8 |
attagcatggcaaggagtggtaaagatattgtatggatctatattaccaagttctttttcagaaatttcccagattttttcacatgactttgacgggtgt |
107 |
Q |
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| T |
34257026 |
attagcatggcaaggagtggtaaagatattgtatggatctatattaccaagttctttttcagaaatttcccagattttttcacatgactttgacgggtgt |
34256927 |
T |
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| Q |
108 |
ttgaccgactgaaaatcacagagcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattg |
202 |
Q |
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| T |
34256926 |
ttgaccgactgaaaatcacagagcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattg |
34256832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 34255599 - 34255405
Alignment:
| Q |
8 |
attagcatggcaaggagtggtaaagatattgtatggatctatattaccaagttctttttcagaaatttcccagattttttcacatgactttgacgggtgt |
107 |
Q |
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| T |
34255599 |
attagcatggcaaggagtggcaaagatactgtatggatctatattaccaagttccttttcagcaatttcccagattttttcacatgactctgacgggtgt |
34255500 |
T |
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| Q |
108 |
ttgaccgactgaaaatcacagagcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattg |
202 |
Q |
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| T |
34255499 |
ttgaccgactgaaaatcacatcgcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattg |
34255405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 26635906 - 26635717
Alignment:
| Q |
13 |
catggcaaggagtggtaaagatattgtatggatctatattaccaagttctttttcagaaatttcccagattttttcacatgactttgacgggtgtttgac |
112 |
Q |
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|||||||||||| |||||||||| || |||| ||||||||||| | ||| || |||| ||||||| |||| |||||||||||||||||||||||| || |
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| T |
26635906 |
catggcaaggaggggtaaagatactgaatgggtctatattacccatttccttatcagcaatttccaagatcctttcacatgactttgacgggtgttcgaa |
26635807 |
T |
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| Q |
113 |
cgactgaaaatcacagagcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattg |
202 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| || |||||||| |
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| T |
26635806 |
tgactgaaaatcacatagcaagttcaagagcttgaatgtttgatccgaaatcataccatttgtccacaaaaactcgaaaatccccaattg |
26635717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 26643109 - 26642915
Alignment:
| Q |
8 |
attagcatggcaaggagtggtaaagatattgtatggatctatattaccaagttctttttcagaaatttcccagattttttcacatgactttgacgggtgt |
107 |
Q |
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||||||||||||||||| || |||||| ||||||| ||||||||||| | ||| || |||| ||||||| |||| ||||||| |||| |||||||||| |
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| T |
26643109 |
attagcatggcaaggaggagtgaagatactgtatgggtctatattacccatttccttatcagcaatttccaagatcctttcacaggactgtgacgggtgt |
26643010 |
T |
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| Q |
108 |
ttgaccgactgaaaatcacagagcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattg |
202 |
Q |
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| ||| |||||||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| ||| || |||||||| |
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| T |
26643009 |
tcgactgactgaaaatcacatagcaagttcaagagcttgaatgtttgatccgagatcataccatttgtccacataaactcgaaaatccccaattg |
26642915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 26628331 - 26628142
Alignment:
| Q |
13 |
catggcaaggagtggtaaagatattgtatggatctatattaccaagttctttttcagaaatttcccagattttttcacatgactttgacgggtgtttgac |
112 |
Q |
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|||||||||||| |||||||||| ||||||| ||||||| ||| | ||||| | | ||| ||||||||||| |||||||| | ||| ||||||| || |
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| T |
26628331 |
catggcaaggaggggtaaagatactgtatgggtctatatcacccatttcttcataggcaatatcccagattttgtcacatgaatctgatgggtgttcaac |
26628232 |
T |
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| Q |
113 |
cgactgaaaatcacagagcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattg |
202 |
Q |
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| |||||||||||| ||||| |||| |||||||||||||||||| |||||||||||| | | |||||||||||||||||| |||||||| |
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| T |
26628231 |
tggctgaaaatcacatagcagattcaggagcttgaatgtttgatccgaaatcataccactggaccacataaactggaacatccccaattg |
26628142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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