View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9645H-LTR4-TNT-insertion-9 (Length: 565)
Name: F9645H-LTR4-TNT-insertion-9
Description: F9645H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9645H-LTR4-TNT-insertion-9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 10 - 556
Target Start/End: Original strand, 10678203 - 10678749
Alignment:
| Q |
10 |
acttaccaatagtaatcccatctaggtctaactttcctcatacgattttcaccatgtggataatcagtttcagatcttcttgcatttctgaaagcacaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10678203 |
acttaccaatagtaatcccatctaggtctaactttcctcatacgattttcaccatgtggataatcagtttcagatcttcttgcatttctgaaagcacaac |
10678302 |
T |
|
| Q |
110 |
atccaatagaatatattcctataagaaaaacaagaataacaacactaagaacagaaactttgtgccaatctgttcttatgttttcaagtacaccagcttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10678303 |
atccaatagaatatattcctataagaaaaacaagaataacaacactaagaacagaaactttgtgccaatctgttcttatgttttcaagtacaccagcttt |
10678402 |
T |
|
| Q |
210 |
gcaagaatcacaatcatagcatagtaaatttggtgcattgttccaacggtagcaatcaatatcttgatccaccaatgttgtttccatgttgaagttgcat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10678403 |
gcaagaatcacaatcatagcatagtaaatttggtgcattgttccaacggtagcaatcaatatcttgatccaccaatgttgtttccatgttgaagttgcat |
10678502 |
T |
|
| Q |
310 |
gttgttggtggtttacaacatccagactgcatttattcaacaatttcataaataaataattaaattattaaaccaaatataaagtagtcaannnnnnnnn |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10678503 |
gttgttggtggtttacaacatccagactgcatttattcaacaatttcataaataaataattaaattattaaaccaaatataaagtagtcaatttttttta |
10678602 |
T |
|
| Q |
410 |
nnnnnnnnnataatttagaagcattggtaccatgattggagtgattggtgagaaatttagagcaaactgaattttttacataaaccttaatgattttgaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10678603 |
tttttttttataatttagaagcattggtaccatgattggagtgattggtgagaaatttagagcaaactgaattttttacataaaccttaatgattttgaa |
10678702 |
T |
|
| Q |
510 |
gaaattttggggtcgaagatatagctctaaattgtgatctgcaattg |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10678703 |
gaaattttggggtcgaagatatagctctaaattgtgatctgcaattg |
10678749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 42969041 - 42969286
Alignment:
| Q |
9 |
gacttaccaatagtaatcccatctaggtctaactttcctcatacgattttcaccatgtggataatcagtttcagatcttcttgcatttctgaaagcacaa |
108 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||| |||| ||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
42969041 |
gacttaccaatggtaatcccatctgggtctaactttggtcatccgattttcaccatatggataatctgtttcagctcttcttgcatttctaaaagcacaa |
42969140 |
T |
|
| Q |
109 |
catccaatagaatatattcctataagaaaaacaagaataacaacactaagaacagaaactttgtgccaatctgttcttatgttttcaagtacaccagctt |
208 |
Q |
| |
|
|||||||| ||||| || ||||| || |||| ||| || ||| | ||||| || | || ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
42969141 |
catccaattgaataaatccctatgagcaaaataagcattgtgacagttagaactgatagcttatgccaattccttcttatgtcttcaagtacaccagctt |
42969240 |
T |
|
| Q |
209 |
tgcaagaatcacaatcatagcatagtaaatttggtgcattgttcca |
254 |
Q |
| |
|
|||| |||||||| ||||| ||||| || ||||| ||||| |||| |
|
|
| T |
42969241 |
tgcatgaatcacactcataacatagcaatgttggttcattgctcca |
42969286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 22444969 - 22445002
Alignment:
| Q |
194 |
caagtacaccagctttgcaagaatcacaatcata |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
22444969 |
caagtacaccagctttgcaagaatcacagtcata |
22445002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 898 times since January 2019
Visitors: 1113