View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9655H-LTR4-TNT-insertion-1 (Length: 660)
Name: F9655H-LTR4-TNT-insertion-1
Description: F9655H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9655H-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 7 - 651
Target Start/End: Original strand, 40416372 - 40417016
Alignment:
| Q |
7 |
aatgaacacaaaactaattgatcaagcatgagagcctctaactagtgcaaaaacacgcattttcattccatgattcttaaatgctcgatttaggtctttc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40416372 |
aatgaacacaaaactaattgatcaagcatgagagcctctaactagtgcaaaaacacgcattttcattccatgattcttaaatgctcgatttaggtctttc |
40416471 |
T |
|
| Q |
107 |
accaatcgttttcgaacctggttacaaaaactaatactataatgtaaaagtcgtgcattcaatccctttcaattcaatgcaaaattgctattttttgcaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40416472 |
accaatcgttttcgaacctggttacaaaaactaatactataatgtaaaagtcgtgcattcaatccctttcaattcaatgcaaaattgctattttttgcaa |
40416571 |
T |
|
| Q |
207 |
attcactccataaaaaagaccttcctcttctctaaaacaagtgccaatacacattaattcattatctataaattaattaactaagccaatcaaatttaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40416572 |
attcactccataaaaaagaccttcctcttctctaaaacaagtgccaatacacattaattcattatctataaattaattaactaagccaatcaaatttaaa |
40416671 |
T |
|
| Q |
307 |
gcttgaaagaaagatgaattgaatttgtatagaccgatgttataaaataattttacagatgcgtccaatgacattcaccatttaaatataacatatgtaa |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40416672 |
gcttgaaagaaagatgaattgaatttgtatagaccgatgttataaaataattttacagatgcatccaatgacattcaccatttaaatataacatatgtaa |
40416771 |
T |
|
| Q |
407 |
ttattaaaaataaagatttgcgtccatgtcttatttttgttacccataatatatatgcaaattaaactcaatttcagttacccgtttggaagggatgtaa |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40416772 |
ttattaaaaataaagatttgcgtccatgtcttatttttgttacccataatatatatgcaaattaaactcaatttcagttacccgtttggaagggatgtaa |
40416871 |
T |
|
| Q |
507 |
cattggaaatgatcatattgagagttgaagttgtttcattagaagaaacaagagaggcttccatgctagacacgaataatattgtgatagcagtggcaca |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40416872 |
cattggaaatgatcatattgagagttgaagttgtttcattagaagaaacaagagaggcttccatgctagacacgaataatattgtgatagcagtggcaca |
40416971 |
T |
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| Q |
607 |
ttcagttgcaaattttcgaataatattttttgtttgtctcaattg |
651 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40416972 |
ttcagttgcaaattttcgaataatattttttgtttgtctcaattg |
40417016 |
T |
|
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