View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9655H-LTR4-TNT-insertion-10 (Length: 247)

Name: F9655H-LTR4-TNT-insertion-10
Description: F9655H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9655H-LTR4-TNT-insertion-10
F9655H-LTR4-TNT-insertion-10
[»] chr5 (3 HSPs)
chr5 (8-183)||(40058419-40058594)
chr5 (132-183)||(26688385-26688436)
chr5 (132-183)||(26958116-26958167)
[»] chr6 (1 HSPs)
chr6 (132-183)||(7159118-7159169)
[»] chr4 (2 HSPs)
chr4 (132-183)||(30478529-30478580)
chr4 (132-183)||(48013669-48013720)
[»] chr3 (2 HSPs)
chr3 (132-183)||(25329603-25329654)
chr3 (132-183)||(42179318-42179369)
[»] chr1 (1 HSPs)
chr1 (132-183)||(45810943-45810994)
[»] chr2 (1 HSPs)
chr2 (132-183)||(19521561-19521612)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 40058594 - 40058419
Alignment:
Q  8 acatatcattcaatcatataaaaatttcttaagatccatcattattgtgaaataaccagggagacaacaaggtcattcccacaaccatggagacgagaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058594 acatatcattcaatcatataaaaatttcttaagatccatcattattgtgaaataaccagggagacaacaaggtcattcccacaaccatggagacgagaga 40058495  T
Q  108 aagnnnnnnnaattgatggaagagaagagaaaatttgtgtatctatcgccttcctcttcgtttgcgtgtatttgag 183  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058494 aagtttttttaattgatggaagagaagagaaaatttgtgtatctatcgccttcctcttcgtttgcgtgtatttgag 40058419  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 26688436 - 26688385
Alignment:
Q  132 aagagaaaatttgtgtatctatcgccttcctcttcgtttgcgtgtatttgag 183  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  26688436 aagagaaaatttgtgtatctattgccttcctcttcgtttgtgtgtatttgag 26688385  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 26958167 - 26958116
Alignment:
Q  132 aagagaaaatttgtgtatctatcgccttcctcttcgtttgcgtgtatttgag 183  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  26958167 aagagaaaatttgtgtatctattgccttcctcttcgtttgtgtgtatttgag 26958116  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 7159118 - 7159169
Alignment:
Q  132 aagagaaaatttgtgtatctatcgccttcctcttcgtttgcgtgtatttgag 183  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  7159118 aagagaaaatttgtgtatctattgccttcctcttcgtttgtgtgtatttgag 7159169  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 30478580 - 30478529
Alignment:
Q  132 aagagaaaatttgtgtatctatcgccttcctcttcgtttgcgtgtatttgag 183  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  30478580 aagagaaaatttgtgtatctattgccttcctcttcgtttgtgtgtatttgag 30478529  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 48013669 - 48013720
Alignment:
Q  132 aagagaaaatttgtgtatctatcgccttcctcttcgtttgcgtgtatttgag 183  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  48013669 aagagaaaatttgtgtatctattgccttcctcttcgtttgtgtgtatttgag 48013720  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 25329654 - 25329603
Alignment:
Q  132 aagagaaaatttgtgtatctatcgccttcctcttcgtttgcgtgtatttgag 183  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  25329654 aagagaaaatttgtgtatctattgccttcctcttcgtttgtgtgtatttgag 25329603  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 42179369 - 42179318
Alignment:
Q  132 aagagaaaatttgtgtatctatcgccttcctcttcgtttgcgtgtatttgag 183  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  42179369 aagagaaaatttgtgtatctattgccttcctcttcgtttgtgtgtatttgag 42179318  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 45810994 - 45810943
Alignment:
Q  132 aagagaaaatttgtgtatctatcgccttcctcttcgtttgcgtgtatttgag 183  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  45810994 aagagaaaatttgtgtatctattgccttcctcttcgtttgtgtgtatttgag 45810943  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 19521612 - 19521561
Alignment:
Q  132 aagagaaaatttgtgtatctatcgccttcctcttcgtttgcgtgtatttgag 183  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  19521612 aagagaaaatttgtgtatctattgcctttctcttcgtttgtgtgtatttgag 19521561  T

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