View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9655H-LTR4-TNT-insertion-11 (Length: 458)
Name: F9655H-LTR4-TNT-insertion-11
Description: F9655H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9655H-LTR4-TNT-insertion-11 |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 448
Target Start/End: Complemental strand, 1494010 - 1493569
Alignment:
| Q |
8 |
aaaaggtaaggaaacaaaccattttttcaaacttcactcaaaattgaaaagaactcacaaattgtctaagaagaaagaaatgtgatgtagttcatacaca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1494010 |
aaaaggtaaggaaacaaaccattttttcaaacttcactcaaaattgaaaagaactcacaaattgtctaagaagaaagaaatgtgatgtagttcatacaca |
1493911 |
T |
|
| Q |
108 |
cgaaaggaaacataaataatcatcatgctgtatttacggatcacgcttaaatgcctttgtgatgccaaagacaccatgcttttggaccaaacccttctga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1493910 |
cgaaaggaaacataaataatcatcatgctgtatttacggatcacgcttaaatgcctttgtgatgccaaagacaccatgcttttggaccaaacccttctga |
1493811 |
T |
|
| Q |
208 |
ggaaaaagatgcgtaataatagcccaa-aaaagaaagaacaaaatgtgcagaagaattatcaagctttacgtaataaaaacacaaaagacttgcttaaaa |
306 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1493810 |
ggaaaaagatgcgtaataatagcccaaaaaaagaaagaacaaaatgtgcagaagaattatcaagctttacgtaataaaaacacaaaagacttgcttaaaa |
1493711 |
T |
|
| Q |
307 |
ttttggttttagagcatctacaaaattacagcagagacatctannnnnnnnggtattaaacgagtttcacttgtacgtataatttatttataatttttct |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1493710 |
ttttggttttagagcatctacaaaattacagcagagacatctattttttttggtattaaacgagtttcacttgtacgtataatttatttataatttttct |
1493611 |
T |
|
| Q |
407 |
cccaccagtatttcacacaannnnnnnaaataaaatctatta |
448 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |
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|
| T |
1493610 |
cccaccagtatttcacacaatttttttaaataaaatctatta |
1493569 |
T |
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