View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9655H-LTR4-TNT-insertion-12 (Length: 491)
Name: F9655H-LTR4-TNT-insertion-12
Description: F9655H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9655H-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 9 - 482
Target Start/End: Original strand, 366579 - 367053
Alignment:
| Q |
9 |
taatatcatatactaaacctggatcaagagcttttctaggccttataaataggtccagcaccatgatcataaggagttgaaaattcagcagaagaaacaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
366579 |
taatatcatatactaaacctggatcaagagcttttctaggtttaataaataggtccagcaccatgatcataaggagttgaaaattcagcagaagaaacaa |
366678 |
T |
|
| Q |
109 |
ctccgagaggtttaatcttattatcatgaacatagtaagttgttgtcatgattaaagattttatagtagctggactccattcggtatgtttagctttgat |
208 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
366679 |
ctccgagaggtttaataatattatcatgaacatagtaagttgttgtcatgattaaagattttatagtagctggactccattcggtatgtttagctttgat |
366778 |
T |
|
| Q |
209 |
cattttcgcgattccacttacatgaggacatgacattgaagttccggaaaacatgttaaacttcactccagcacattcggactcaagcttgcatttacag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
366779 |
cattttcgcgattccacttacatgaggacatgacattgaagttccggaaaacatgttaaacttcactccagcacattcggactcaagcttgcatttacag |
366878 |
T |
|
| Q |
309 |
gttggaaaaacctcttgataattgtcacaccaaactattgaccgtgtctcagaacctttgtagatcttcctacaaattgaataatattttccctttttct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
366879 |
gttggaaaaacctcttgataattgtcacaccaaactattgaccgtgtctcagaacctttgtagatcttcctacaaattgaataatattttccctttttct |
366978 |
T |
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| Q |
409 |
tctcaaatacctgttctgcaatttcagcagcattgccgtcta-nnnnnnnatcatcaaactatcaaatccaattg |
482 |
Q |
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| T |
366979 |
tctcaaatacctgttctgcaatttcagcagcattgccgtctattttttttatcatcaaactatcaaatccaattg |
367053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 46215422 - 46215169
Alignment:
| Q |
11 |
atatcatatactaaacctggatcaagagcttttctaggccttataaataggtccagcaccatgatcataaggagttgaaaattcagcagaagaaacaact |
110 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| || |||| | |||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
46215422 |
atatcatataataaacctggatcaagagcttttctagg----attaatatggccagcaccatgatcataaggagttgaaaattcagcagaagaagcatct |
46215327 |
T |
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| Q |
111 |
ccgagaggtttaatcttattatcatgaacatagtaagttgttgtcatgattaaagattttatagtagctggactccattcggtatgtttagctttgatca |
210 |
Q |
| |
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| T |
46215326 |
ctaagaggtttaatagtattatcatgaacata---agctgttgtcatgattgctgattttatagcagctggactccattcaggatgtttagctttgatca |
46215230 |
T |
|
| Q |
211 |
ttttcgcgattccacttacatgaggacatgacattgaagttccggaaaacatgttaaactt |
271 |
Q |
| |
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| |||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |
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| T |
46215229 |
tagccgcgattccacttacatgaggacatgacatcgaagttccggagagtatgttaaactt |
46215169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 269 - 395
Target Start/End: Complemental strand, 23407738 - 23407612
Alignment:
| Q |
269 |
cttcactccagcacattcggactcaagcttgcatttacaggttggaaaaacctcttgataattgtcacaccaaactattgaccgtgtctcagaacctttg |
368 |
Q |
| |
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|||||||| |||||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | ||| ||||||| |||||||| |
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| T |
23407738 |
cttcactctagcacactcgaactcaagcttgcatttataggttggaaaaacctcatgataattgtcacaccaaatgactgattgtgtctctaaacctttg |
23407639 |
T |
|
| Q |
369 |
tagatcttcctacaaattgaataatat |
395 |
Q |
| |
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|| ||||||| |||||| ||||||||| |
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| T |
23407638 |
taaatcttccaacaaatagaataatat |
23407612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 289 - 393
Target Start/End: Complemental strand, 44763648 - 44763544
Alignment:
| Q |
289 |
actcaagcttgcatttacaggttggaaaaacctcttgataattgtcacaccaaactattgaccgtgtctcagaacctttgtagatcttcctacaaattga |
388 |
Q |
| |
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||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||| ||||||| |||||||| |
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| T |
44763648 |
actcacgcttgcatttaaaggttggaaaaacctcaggataattgtcacaccaaactactgatcgtgtctctaaacctttgtaaatcttccaccaaattga |
44763549 |
T |
|
| Q |
389 |
ataat |
393 |
Q |
| |
|
||||| |
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| T |
44763548 |
ataat |
44763544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 7523866 - 7523920
Alignment:
| Q |
216 |
gcgattccacttacatgaggacatgacattgaagttccggaaaacatgttaaact |
270 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||| || |||| |||||||||| |
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|
| T |
7523866 |
gcgattccactaacatgaggacatgacatagaagtacctgaaattatgttaaact |
7523920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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