View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9655H-LTR4-TNT-insertion-13 (Length: 325)
Name: F9655H-LTR4-TNT-insertion-13
Description: F9655H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9655H-LTR4-TNT-insertion-13 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 6842887 - 6842711
Alignment:
| Q |
8 |
acacaagattagaatatagttgagaaatcatctattatttttcttgatgttattctgctctggccggccttatcaacnnnnnnnnngtgtgtgagtttct |
107 |
Q |
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| T |
6842887 |
acacaagattagaatatagttgagaaatcatctattatttttcttgatgttattctgctctggccggccttatcaacaaaaaaaaagtgtgtgagtttct |
6842788 |
T |
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| Q |
108 |
ggtagtgattgtcattttatctacatactcaaaataaaggtaaggtttttcttatcatgtgtcatttcgatatttca |
184 |
Q |
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| T |
6842787 |
ggtagtgattgtcattttatctacatactcaaaataaaggtaaggtttttcttatcatgtgtcatttcgatatttca |
6842711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 9225615 - 9225554
Alignment:
| Q |
8 |
acacaagattagaatatagttgagaaatcatctattatttttcttgatgttattctgctctg |
69 |
Q |
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| T |
9225615 |
acacaagattatagtatagttgagaaatcacatattctttttcttgatgttattatgctctg |
9225554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 20647227 - 20647163
Alignment:
| Q |
8 |
acacaagattagaatatagttgagaaatcatctattatttttcttgatgttattctgctctggcc |
72 |
Q |
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| T |
20647227 |
acacaagattagagtataggtgagctatcgcctattctttttcttgatgtcattcggctctggcc |
20647163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 17462670 - 17462734
Alignment:
| Q |
7 |
aacacaagattagaatatagttgagaaatcatctattatttttcttgatgttattctgctctggcc |
72 |
Q |
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| T |
17462670 |
aacacaagattagagtatagttgagaaatcatct-ttctctttcttgatgttattatgctctggcc |
17462734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 641411 - 641472
Alignment:
| Q |
8 |
acacaagattagaatatagttgagaaatcatctattatttttcttgatgttattctgctctg |
69 |
Q |
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| T |
641411 |
acacaagattagagtataggtgagatatcgcctattctttttcttgatgtcattctgctctg |
641472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 30960514 - 30960453
Alignment:
| Q |
8 |
acacaagattagaatatagttgagaaatcatctattatttttcttgatgttattctgctctg |
69 |
Q |
| |
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|||||||||| || |||||||||||||||| ||||| ||||||||||||| ||||||||||| |
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| T |
30960514 |
acacaagattggagtatagttgagaaatcacctattctttttcttgatgtgattctgctctg |
30960453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 28215617 - 28215552
Alignment:
| Q |
7 |
aacacaagattagaatatagttgagaaatcatctattatttttcttgatgttattctgctctggcc |
72 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| | ||||||||||||||| |||| ||||| |
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| T |
28215617 |
aacacaagattagagtatagttgagaaatcacagattctctttcttgatgttattatgctttggcc |
28215552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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