View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9655H-LTR4-TNT-insertion-2 (Length: 309)

Name: F9655H-LTR4-TNT-insertion-2
Description: F9655H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9655H-LTR4-TNT-insertion-2
F9655H-LTR4-TNT-insertion-2
[»] chr7 (7 HSPs)
chr7 (6-299)||(4332821-4333114)
chr7 (6-299)||(4337068-4337361)
chr7 (138-252)||(4451981-4452091)
chr7 (138-237)||(4404749-4404845)
chr7 (18-96)||(35424875-35424953)
chr7 (262-299)||(4404909-4404946)
chr7 (165-246)||(4477620-4477701)
[»] scaffold0346 (1 HSPs)
scaffold0346 (9-299)||(12949-13239)
[»] chr5 (2 HSPs)
chr5 (7-104)||(28503229-28503326)
chr5 (46-96)||(30124592-30124642)
[»] chr2 (1 HSPs)
chr2 (5-104)||(24510922-24511021)
[»] chr6 (1 HSPs)
chr6 (10-106)||(2119216-2119313)
[»] chr4 (1 HSPs)
chr4 (12-61)||(9689486-9689535)


Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 6 - 299
Target Start/End: Original strand, 4332821 - 4333114
Alignment:
Q  6 caccttattcgtattctaaaatctgaaatattttaacttcttttagagatttttatcgaatgtttttgccattggaattctataatccaaattgcataga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332821 caccttattcgtattctaaaatctgaaatattttaacttcttttagagatttttatcgaatgtttttgccattggaattctataatccaaattgcataga 4332920  T
Q  106 atatggtgaaatcaataaagtggaaaaggaatgaatcttgaggtatctattatgcaaagaagaaaataagtagttttagacttttggctttaaggttggt 205  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332921 atatggtgaaatcaataaagtgaaaaaggaatgaatcttgaggtatctattatgcaaagaagaaaataagtagttttagacttttggctttaaggttggt 4333020  T
Q  206 gcagtaaacagggaagaataagctattcaaattgccaattgtaattttgnnnnnnnaaactattggaacacaaggagtgttaatgtgtgaatta 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  4333021 gcagtaaacagggaagaataagctattcaaattgccaattgtaattttgtttttttaaactattggaacacaaggagtgttaatgtgtgaatta 4333114  T

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Target: chr7; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 6 - 299
Target Start/End: Original strand, 4337068 - 4337361
Alignment:
Q  6 caccttattcgtattctaaaatctgaaatattttaacttcttttagagatttttatcgaatgtttttgccattggaattctataatccaaattgcataga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337068 caccttattcgtattctaaaatctgaaatattttaacttcttttagagatttttatcgaatgtttttgccattggaattctataatccaaattgcataga 4337167  T
Q  106 atatggtgaaatcaataaagtggaaaaggaatgaatcttgaggtatctattatgcaaagaagaaaataagtagttttagacttttggctttaaggttggt 205  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337168 atatggtgaaatcaataaagtgaaaaaggaatgaatcttgaggtatctattatgcaaagaagaaaataagtagttttagacttttggctttaaggttggt 4337267  T
Q  206 gcagtaaacagggaagaataagctattcaaattgccaattgtaattttgnnnnnnnaaactattggaacacaaggagtgttaatgtgtgaatta 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  4337268 gcagtaaacagggaagaataagctattcaaattgccaattgtaattttgtttttttaaactattggaacacaaggagtgttaatgtgtgaatta 4337361  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 4451981 - 4452091
Alignment:
Q  138 gaatcttgaggtatctattatgcaaagaagaaaataagtagttttagacttttggctttaaggttggtgcagtaaacagggaagaataagctattcaaat 237  Q
    ||||||||| ||||||||||  |||||||   ||||| ||||||| || ||||||||||| |||||||| |||||||||||||  |||||| |||| |||    
T  4451981 gaatcttgaagtatctattactcaaagaa---aataaatagttttggatttttggctttatggttggtgtagtaaacagggaaagataagccattc-aat 4452076  T
Q  238 tgccaattgtaattt 252  Q
    ||||||||| |||||    
T  4452077 tgccaattgcaattt 4452091  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 4404749 - 4404845
Alignment:
Q  138 gaatcttgaggtatctattatgcaaagaagaaaataagtagttttagacttttggctttaaggttggtgcagtaaacagggaagaataagctattcaaat 237  Q
    ||||||||| |||||||||| ||||||||   | |||||||||||  ||||||||||| | |||||||| ||||  ||| |||  |||||||||||||||    
T  4404749 gaatcttgaagtatctattacgcaaagaa---attaagtagttttgaacttttggcttaatggttggtgtagtatccagagaaagataagctattcaaat 4404845  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 35424953 - 35424875
Alignment:
Q  18 attctaaaatctgaaatattttaacttcttttagagatttttatcgaatgtttttgccattggaattctataatccaaa 96  Q
    ||||||||||||||||||||||||| | |||| ||| |||||||   |||||| |||| ||   |||||||||||||||    
T  35424953 attctaaaatctgaaatattttaacatattttggaggtttttatgcgatgtttatgccgttcagattctataatccaaa 35424875  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 4404909 - 4404946
Alignment:
Q  262 aaactattggaacacaaggagtgttaatgtgtgaatta 299  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  4404909 aaactgttggaacacaaagagtgttaatgtgtgaatta 4404946  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 4477701 - 4477620
Alignment:
Q  165 aagaaaataagtagttttagacttttggctttaaggttggtgcagtaaacagggaagaataagctattcaaattgccaattg 246  Q
    |||||||||| |||||||  | |||| |||||| |||| ||| |||| |||| |||  ||||||||||||||| ||||||||    
T  4477701 aagaaaataattagttttgaaattttagctttatggttagtgtagtagacagagaaagataagctattcaaatcgccaattg 4477620  T

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Target: scaffold0346 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0346
Description:

Target: scaffold0346; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 13239 - 12949
Alignment:
Q  9 cttattcgtattctaaaatctgaaatattttaacttcttttagagatttttatcgaatgtttttgccattggaattctataatccaaattgcatagaata 108  Q
    ||||||||||||||||||||||||||||||||||| ||||| || |||||||||  ||||||||||| ||||||||||||||||| |||||||| ||| |    
T  13239 cttattcgtattctaaaatctgaaatattttaactactttttgaaatttttatcagatgtttttgccgttggaattctataatccgaattgcatggaaca 13140  T
Q  109 tggtgaaatcaataaagtggaaaaggaatgaatcttgaggtatctattatgcaaagaagaaaataagtagttttagacttttggctttaaggttggtgca 208  Q
    |||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  13139 tggtgaaatcaataaagtggaaaaagaatgagtcttgaagtatctattatgcaaagaagaaaataagtagttttagtcttttggctttaaggttggtgta 13040  T
Q  209 gtaaacagggaagaataagctattcaaattgccaattgtaattttgnnnnnnnaaactattggaacacaaggagtgttaatgtgtgaatta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||    
T  13039 gtaaacagggaagaataagctattcaaattgccaattgtaattttgtttttttaaacttttggaacacaaggagtgttaatgtgtgaatta 12949  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 28503326 - 28503229
Alignment:
Q  7 accttattcgtattctaaaatctgaaatattttaacttcttttagagatttttatcgaatgtttttgccattggaattctataatccaaattgcatag 104  Q
    |||||||||| ||||||||||||||||||||| ||| | |||| ||| ||||||| || | ||| |||| || ||||| ||||||||||| |||||||    
T  28503326 accttattcgaattctaaaatctgaaatatttcaacgtattttggaggtttttatggagtatttatgccgttcgaattttataatccaaactgcatag 28503229  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 30124592 - 30124642
Alignment:
Q  46 ttttagagatttttatcgaatgtttttgccattggaattctataatccaaa 96  Q
    |||||||||||||||| |||||||| || ||||  ||||||||||||||||    
T  30124592 ttttagagatttttatagaatgtttatgtcatttaaattctataatccaaa 30124642  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 24510922 - 24511021
Alignment:
Q  5 acaccttattcgtattctaaaatctgaaatattttaacttcttttagagatttttatcgaatgtttttgccattggaattctataatccaaattgcatag 104  Q
    ||||| |||||| ||| ||||||||||||||||| ||| | |||| ||| ||||||| | |||||| |||| || |||||||||||| | || |||||||    
T  24510922 acaccctattcggattttaaaatctgaaatatttaaacgtattttggaggtttttatgggatgtttatgccgtttgaattctataattcgaactgcatag 24511021  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 2119313 - 2119216
Alignment:
Q  10 ttattcgtattctaaaatctgaaatattttaacttcttttag-agatttttatcgaatgtttttgccattggaattctataatccaaattgcatagaa 106  Q
    ||||||| |||||| |||| ||||||||||||| | |||| | ||||||||||  ||||||| || | || |||||| |||||||||| |||||||||    
T  2119313 ttattcggattctacaatccgaaatattttaacgtgtttttgaagatttttatgaaatgtttatgtctttcgaattccataatccaaactgcatagaa 2119216  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 9689535 - 9689486
Alignment:
Q  12 attcgtattctaaaatctgaaatattttaacttcttttagagatttttat 61  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||||| ||||    
T  9689535 attcgaattttaaaatctgaaatattttaacttgttttagagattcttat 9689486  T

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