View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9655H-LTR4-TNT-insertion-3 (Length: 329)
Name: F9655H-LTR4-TNT-insertion-3
Description: F9655H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9655H-LTR4-TNT-insertion-3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 679344 - 679034
Alignment:
| Q |
8 |
tctaaaacttatagtgagtttgaaatgtagttatatgcctcattttcannnnnnnnnnnnctttctagttctgaaaattnnnnnnntgctgcgtatattt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |
|
|
| T |
679344 |
tctaaaacttatagtgagtttgaaatgtagttatatgcctcattttcattttttttttt-ctttctagttctgagaattagaagaatgctgcgtatattt |
679246 |
T |
|
| Q |
108 |
gagtattttcctaaacaggtaaaaggtgaggttgttaacaaaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcc |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679245 |
gagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcc |
679146 |
T |
|
| Q |
208 |
tagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctnnnnnnnttaacatgttattattctcgtggtaactttatgtgttgtt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679145 |
tagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgtt |
679046 |
T |
|
| Q |
308 |
agtgctaaatta |
319 |
Q |
| |
|
|||||||||||| |
|
|
| T |
679045 |
agtgctaaatta |
679034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 751148 - 750841
Alignment:
| Q |
8 |
tctaaaacttatagtgagtttgaaatgtagttatatgcctcattttcannnnnnnnnnnnctttctagttctgaaaattnnnnnnntgctgcgtatattt |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| | |||| |||||||||||||| |
|
|
| T |
751148 |
tctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt----tttctagttcttagaattagaagaatgctgcgtatattt |
751053 |
T |
|
| Q |
108 |
gagtattttcctaaacaggtaaaaggtgaggttgttaacaaaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcc |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751052 |
gagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcc |
750953 |
T |
|
| Q |
208 |
tagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctnnnnnnnttaacatgttattattctcgtggtaactttatgtgttgtt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
750952 |
tagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgtt |
750853 |
T |
|
| Q |
308 |
agtgctaaatta |
319 |
Q |
| |
|
|||||||||||| |
|
|
| T |
750852 |
agtgctaaatta |
750841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 102 - 258
Target Start/End: Original strand, 2632719 - 2632870
Alignment:
| Q |
102 |
atatttgagtattttcctaaacaggtaaaaggtgaggttgttaacaaaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgc |
201 |
Q |
| |
|
||||||||||||||||| | | | |||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2632719 |
atatttgagtattttccaagataatgaaaaggtgaggttgttaacagaatggaaacatgtttatccttgc----gagtgcttgggtatgtggcttagtgc |
2632814 |
T |
|
| Q |
202 |
tcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaatttt |
258 |
Q |
| |
|
|||| ||||| ||||||||| ||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
2632815 |
tcattctagttgactgctctgtagagcttccc-ccatacatgttagtcatcaatttt |
2632870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 187 - 319
Target Start/End: Complemental strand, 9564816 - 9564684
Alignment:
| Q |
187 |
tatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctnnnnnnnttaacatgttattattctc |
286 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||| |||||| | || |
|
|
| T |
9564816 |
tatgtggcttagtgttcatcctagttgactgctctatagagcttccctccatacatgttagtcataaattttctaaagaaattaacattttattaatttc |
9564717 |
T |
|
| Q |
287 |
gtggtaactttatgtgttgttagtgctaaatta |
319 |
Q |
| |
|
||| ||||||||||||||||| |||||||||| |
|
|
| T |
9564716 |
ttgggaactttatgtgttgttaatgctaaatta |
9564684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 313
Target Start/End: Complemental strand, 7317545 - 7317367
Alignment:
| Q |
131 |
aggtgaggttgttaacaaaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggctt |
230 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| |||| ||||||||| || ||| |||||| ||||||||||| | | ||||| || ||| |
|
|
| T |
7317545 |
aggtgaggttgttaacagaatatcaacatgtttatcattatc----agtgcttggataggtgacttagtactcatcctagttgcccgctctgtacaactt |
7317450 |
T |
|
| Q |
231 |
cccaccatacatgttagtcatcaattttctnnnnnnnttaacatgttattattctcgtggtaactttatgtgttgttagtgct |
313 |
Q |
| |
|
||| | || |||||||||||||||| |||| |||||||||||||| | || ||| ||||||||||||| ||||||| |
|
|
| T |
7317449 |
ccctctattcatgttagtcatcaatcttctaaagaatttaacatgttattaatttcttggcaactttatgtgtttctagtgct |
7317367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 313
Target Start/End: Complemental strand, 668075 - 667964
Alignment:
| Q |
202 |
tcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctnnnnnnnttaacatgttattattctcgtggtaactttatgt |
301 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||| |||||| | || ||| || ||||||| |
|
|
| T |
668075 |
tcatcctagtttcctgctctgtagagcttccctccatacatgttagtcatcaattttctaaacaatttaacattttattaatttcttggcaattttatgt |
667976 |
T |
|
| Q |
302 |
gttgttagtgct |
313 |
Q |
| |
|
|||||||||||| |
|
|
| T |
667975 |
gttgttagtgct |
667964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 9564876 - 9564819
Alignment:
| Q |
103 |
tatttgagtattttcctaaacaggtaaaaggtgaggttgttaacaaaatgtcaacatg |
160 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
9564876 |
tatttgagtattttccaagacagtgaaaaggtgaggttgttaacagaatgtcaacatg |
9564819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 879 times since January 2019
Visitors: 1111