View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9655H-LTR4-TNT-insertion-5 (Length: 414)
Name: F9655H-LTR4-TNT-insertion-5
Description: F9655H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9655H-LTR4-TNT-insertion-5 |
 | |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0308 (1 HSPs) |
| | |
|
| [»] scaffold0237 (1 HSPs) |
| | |
|
| [»] scaffold0051 (2 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 26)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 30577820 - 30578217
Alignment:
| Q |
10 |
ataagggtactgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30577820 |
ataagggtactgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttaatc |
30577919 |
T |
|
| Q |
110 |
cattaatcattatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30577920 |
cattaatcattatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaa |
30578019 |
T |
|
| Q |
210 |
atacccatctattaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttcc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30578020 |
atacccatctattaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttcc |
30578119 |
T |
|
| Q |
310 |
ttacataaaccatcgatcaatatattaaaactacaaacatttgggacaatgtttttcaatctcatttcattaaacaaacgaatagcatcttccaattg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30578120 |
ttacataaaccatcgatcaatatattaaaactacaaacatttgggacaatgtttttcaatctcatttcattaaacaaacgaatagcatcttccaattg |
30578217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 30154447 - 30154122
Alignment:
| Q |
10 |
ataagggtactgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtc |
109 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| || || |
|
|
| T |
30154447 |
ataagggaattgtatgttatagtattaggagtcaaacttttggaatgcatttctttaaagagaatcacagcttcatccaccattttaaccttacataatc |
30154348 |
T |
|
| Q |
110 |
cattaatcattatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaa |
209 |
Q |
| |
|
|||||||||| | | |||||||||||| || | ||||||||| || |||| | | | ||||| |||| | ||||| ||| ||| |||||||||||| |
|
|
| T |
30154347 |
cattaatcatgacactgtagctacgaacattaggagtcactccccttcgagcaagtgtatcgaatacatatgtggccttattcacttctttaaccaagaa |
30154248 |
T |
|
| Q |
210 |
atacccatctattaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttcc |
309 |
Q |
| |
|
||||||||| || |||||| || |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| ||| |||||| || |||||| |
|
|
| T |
30154247 |
atacccatccatcaaagaattataagtaacaacatcaggttccacatgttgttttatcataacagtcaaaacacttttagctcttttcacctctccttcc |
30154148 |
T |
|
| Q |
310 |
ttacataaaccatcgatcaatatatt |
335 |
Q |
| |
|
|||||||||||||| | ||||||||| |
|
|
| T |
30154147 |
ttacataaaccatcaaccaatatatt |
30154122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 24739255 - 24739575
Alignment:
| Q |
18 |
actgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatc |
117 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||| | ||||||||||| | |||| | || ||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
24739255 |
actgtatgttacagtattaggagccatacttttggaatgcatttctttgaggagattaacggcttcatccaccattttagtcttacatagtccattaatc |
24739354 |
T |
|
| Q |
118 |
attatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccat |
217 |
Q |
| |
|
|| | | | |||||| ||| |||| ||||||||| || |||||||| |||||| | | || | ||||| ||| ||| ||| |||||||||||||||| |
|
|
| T |
24739355 |
atgacactatagctatgaacatcaggagtcactccccttctagccatagtgttgaacacaaatgtggccttattctcttgtttgaccaagaaatacccat |
24739454 |
T |
|
| Q |
218 |
ctattaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataa |
317 |
Q |
| |
|
| || |||||| || |||||| |||||||| | |||||||||||||||||||||||| || ||| || || || ||||| || |||||||||||||| |
|
|
| T |
24739455 |
ccatcaaagaattataagtaatgacatcaggatccacactttgttttatcataacagctaacacatttctagcttttttcatctctccttccttacataa |
24739554 |
T |
|
| Q |
318 |
accatcgatcaatatattaaa |
338 |
Q |
| |
|
|||||| | |||||||||||| |
|
|
| T |
24739555 |
accatcaaccaatatattaaa |
24739575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 24934604 - 24934286
Alignment:
| Q |
20 |
tgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcat |
119 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||| | ||||||||||| |||||| | || ||||||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
24934604 |
tgtatgttacagtattaggagccatacttttggaatgcatttctttgaagagattaacggcttcatccaccattttagtcttgcatagtccattaatcat |
24934505 |
T |
|
| Q |
120 |
tatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatct |
219 |
Q |
| |
|
||| ||||||| ||| |||| ||||||||| || |||||||| |||||| | | || | ||||| ||| ||| ||| ||||||||||||||||| |
|
|
| T |
24934504 |
aatactgtagctttgaacatcaggagtcactccccttctagccatagtgttgaacacaaatgtggccttattctcttgtttgaccaagaaatacccatcc |
24934405 |
T |
|
| Q |
220 |
attaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaac |
319 |
Q |
| |
|
||||||||| || ||||||||| || || | ||||| |||||||||||||||||| || ||| || || || ||||| || |||||||||||||||| |
|
|
| T |
24934404 |
attaaagaattataagtaacaatattagaatccacaccttgttttatcataacagctaacacatttctagcttttttcatctctccttccttacataaac |
24934305 |
T |
|
| Q |
320 |
catcgatcaatatattaaa |
338 |
Q |
| |
|
|||| | |||||||||||| |
|
|
| T |
24934304 |
catcaaccaatatattaaa |
24934286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 29953756 - 29954011
Alignment:
| Q |
20 |
tgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcat |
119 |
Q |
| |
|
|||||| ||| ||||||||||||||| || || | ||||| ||||| |||||| || ||||||||| |||||||||| ||||| || ||| |||||||| |
|
|
| T |
29953756 |
tgtatgatattgtatcaggagtcatatttctggaatgcatatctttgaagagattcgcagcttcattcaccattttattcttacataatccgttaatcat |
29953855 |
T |
|
| Q |
120 |
tatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatct |
219 |
Q |
| |
|
| |||||||||| |||| ||| ||||||||| ||||||| |||| ||||||||||||| | |||||||| ||| |||||| | |||||||||||| |
|
|
| T |
29953856 |
gacattgtagctatgaagttcaggagtcactcccctttgagcaatagtgttgaatatatatgtggccttgttgacttctttaactaggaaatacccatcc |
29953955 |
T |
|
| Q |
220 |
attaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagc |
275 |
Q |
| |
|
|| |||||| || |||||||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
29953956 |
atcaaagaagtataagtaacaacattaggttccacaccttgttttatcataacagc |
29954011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 29949959 - 29950269
Alignment:
| Q |
20 |
tgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcat |
119 |
Q |
| |
|
|||||| || |||||| ||||||||| | || | ||||||||||| |||||| || ||||||||| |||||||||| ||||| || ||| |||||||| |
|
|
| T |
29949959 |
tgtatgatacagtatctggagtcatattactggaatgcatttctttgaagagattcgcagcttcattcaccattttattcttacataatccgttaatcat |
29950058 |
T |
|
| Q |
120 |
tatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatct |
219 |
Q |
| |
|
|||||||||||| || || | ||||||||| || ||| | | |||||||| || | | |||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
29950059 |
gatattgtagctaaaaacattaggagtcactccccttagaggaagggtgttgaatagatgtttggccttgttgacttctttaaccaagaaataaccatcc |
29950158 |
T |
|
| Q |
220 |
attaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaac |
319 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||||||| ||| | || || |||||| || |||| ||||||||||| |
|
|
| T |
29950159 |
attaaagaactataagtaacaatatcaggttccacacgttgttttatcataacagccaacacatgtctagcttttttcacctctccttgcttacataaac |
29950258 |
T |
|
| Q |
320 |
catcgatcaat |
330 |
Q |
| |
|
|||||| |||| |
|
|
| T |
29950259 |
catcgaccaat |
29950269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 55 - 339
Target Start/End: Complemental strand, 24942102 - 24941818
Alignment:
| Q |
55 |
tgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcattatattgtagctacgaagatcaatagtcactccgt |
154 |
Q |
| |
|
|||| |||||| |||||| | || |||||||||||||||||| ||||| || |||| | ||||| | | |||||||| |||||| | || |||||| |
|
|
| T |
24942102 |
tgcaattctttgaagagattgacggcttcatccaccattttattcttacataatccagttatcatgacactgtagctatgaagattaggagccactcctc |
24942003 |
T |
|
| Q |
155 |
tttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcac |
254 |
Q |
| |
|
|||||||||||| |||||||| |||| | ||| ||||| ||| ||||||||||||| ||||||| || |||||| || |||||||||||| ||||| ||| |
|
|
| T |
24942002 |
tttgagccatagtgttgaatacatatgtggccctgttcacttctttaaccaagaaacacccatccatcaaagaagtataagtaacaacattaggttccac |
24941903 |
T |
|
| Q |
255 |
actttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaaccatcgatcaatatattaaaa |
339 |
Q |
| |
|
|| |||||||||||||||||| || ||| || || || ||| | || |||||||||||||||||||| | |||| |||||||| |
|
|
| T |
24941902 |
accttgttttatcataacagctaacacatttctagcttgtttaatttctccttccttacataaaccatcaaccaatgtattaaaa |
24941818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 30149474 - 30149154
Alignment:
| Q |
10 |
ataagggtactgtatgttatagtatcaggagtcata-cttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagt |
108 |
Q |
| |
|
||||||| | ||||||||| ||| | |||| ||||| |||| |||| |||||||||| || ||| | || |||||||||||||||||| ||||| || | |
|
|
| T |
30149474 |
ataagggaattgtatgttacagtgttaggaatcatatctttcgaat-gcatttctttgaaaagatttacggcttcatccaccattttattcttacataat |
30149376 |
T |
|
| Q |
109 |
ccattaatcattatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaaga |
208 |
Q |
| |
|
|| |||||||| |||||||||||| || || | ||||||||| || ||| | | |||||||| || | | |||||||| ||| ||||||||||| |
|
|
| T |
30149375 |
ccgttaatcatgatattgtagctaaaaacattaggagtcactccccttagagaaagggtgttgaatagatgtttggccttgttgacttctttaaccaaga |
30149276 |
T |
|
| Q |
209 |
aatacccatctattaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttc |
308 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||||||| ||| | || || |||||| || |||| |
|
|
| T |
30149275 |
aataaccatccattaaagaactataagtaacaatatcaggttccacacgttgttttatcataacagccaacacatatctagcttttttcacctctcctta |
30149176 |
T |
|
| Q |
309 |
cttacataaaccatcgatcaat |
330 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
30149175 |
cttacataaaccatcgaccaat |
30149154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 30053366 - 30053110
Alignment:
| Q |
18 |
actgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatc |
117 |
Q |
| |
|
||||||||| | ||||| ||||||||| |||| || ||||||||||| || || ||||||||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
30053366 |
actgtatgtaacagtattaggagtcatgttttttaaatgcatttctttgaaaagtttcacagcttcatccaccattttattcttacataatccattaatc |
30053267 |
T |
|
| Q |
118 |
attatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccat |
217 |
Q |
| |
|
|| | | |||||||| ||| || | ||||||||| || ||| |||| |||||||| || | | |||||||| ||| ||| |||||||||||||||| |
|
|
| T |
30053266 |
atgacaatgtagctatgaacattaggagtcactccccttagagaaatagtgttgaatacatgtttggccttgttgacttcttttaccaagaaatacccat |
30053167 |
T |
|
| Q |
218 |
ctattaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacag |
274 |
Q |
| |
|
| || |||||| || |||||||||||| ||||| ||| | ||||||||||||||||| |
|
|
| T |
30053166 |
ccatcaaagaagtataagtaacaacattaggttccacgccttgttttatcataacag |
30053110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 21160687 - 21160990
Alignment:
| Q |
20 |
tgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcat |
119 |
Q |
| |
|
||||||||| | ||||||||| ||| |||| || |||||||||||||||||| | || |||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
21160687 |
tgtatgttacaatatcaggagccatgttttttaaatgcatttctttaaagagattaacggcttcatccaccattttattcttacatagtccattaatcat |
21160786 |
T |
|
| Q |
120 |
tatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatct |
219 |
Q |
| |
|
| | | |||||| ||| || | ||||||||| || | |||||| |||||| | | || | ||||| ||| ||| ||| ||||||||||||||||| |
|
|
| T |
21160787 |
gacagtatagctatgaacattagaagtcactccccttctaaccatagtgttgaacacaaatgtggccttattcacttctttgaccaagaaatacccatcc |
21160886 |
T |
|
| Q |
220 |
attaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaac |
319 |
Q |
| |
|
|| ||| ||||| |||||||||||| | ||| ||| | |||||||||||||| ||| || || || || || ||||| || |||||||||||||||| |
|
|
| T |
21160887 |
atcaaaaaactataagtaacaacattaagttccacgccttgttttatcataaaagctaacacttttctagcttttttcatctctccttccttacataaac |
21160986 |
T |
|
| Q |
320 |
catc |
323 |
Q |
| |
|
|||| |
|
|
| T |
21160987 |
catc |
21160990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 273
Target Start/End: Complemental strand, 24884939 - 24884824
Alignment:
| Q |
158 |
gagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcacact |
257 |
Q |
| |
|
|||| |||| |||||||| |||| | ||||||||| ||| ||||||||||||||| ||||| ||||||||| || |||||||||||| ||||| |||| |
|
|
| T |
24884939 |
gagcaatagtgttgaatacatatgtggccttgttcacttctttaaccaagaaataaccatccattaaagaagtataagtaacaacattaggttccacaac |
24884840 |
T |
|
| Q |
258 |
ttgttttatcataaca |
273 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
24884839 |
ttgtcttatcataaca |
24884824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 301
Target Start/End: Complemental strand, 29876727 - 29876481
Alignment:
| Q |
55 |
tgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcattatattgtagctacgaagatcaatagtcactccgt |
154 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||| ||||||| |||||| | |||||||||||| ||| ||||||| |||| || ||||||||| |
|
|
| T |
29876727 |
tgcatttcttggaagagattcattgcttcatccatcattttaaccttacaaaatccattaatcatgatactgtagctccgaacatttgcagtcactcccc |
29876628 |
T |
|
| Q |
155 |
tttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcac |
254 |
Q |
| |
|
| ||| |||||| ||||||||||| ||||||||| | ||| |||||||| |||| ||||| |||||||| || |||||| || |||||||||||| |
|
|
| T |
29876627 |
tctgaaccatagtgttgaatatattcttagccttgtccacttctttaaccagacaatatccatccattaaagagttataagtaataatatcaggtttcac |
29876528 |
T |
|
| Q |
255 |
actttgttttatcataacagccaaaacacttttacctcctttcacat |
301 |
Q |
| |
|
|| || ||| ||||| ||||| | |||| ||||||| || |||||| |
|
|
| T |
29876527 |
accttctttcatcatcacagcaacaacagctttaccttctctcacat |
29876481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 278
Target Start/End: Complemental strand, 30132633 - 30132391
Alignment:
| Q |
39 |
agtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccatttt-----agccttacttagtccattaatcattatattgtagctac |
133 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| | ||||| || ||||| || ||| || ||||||| |
|
|
| T |
30132633 |
agtcatacttttggaatgcatttctttaaagagaatcagagcttcatccaccattttattcaattcttacataatccatcaaccatgttagtgtagctct |
30132534 |
T |
|
| Q |
134 |
gaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatctattaaagaacta-c |
232 |
Q |
| |
|
||| |||| | ||| ||| |||||| ||||| |||| |||||| | ||| ||||| ||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
30132533 |
gaacatcaggaatcattcccctttgaggcatagttttga--atatatgtggccatgttcacttctttaaccaagaaataaccatccattaaagaactatt |
30132436 |
T |
|
| Q |
233 |
aagtaacaacatcaggtttcacactttgttttatcataacagccaa |
278 |
Q |
| |
|
|||||||||||| | ||| || | |||||||||||| |||||||| |
|
|
| T |
30132435 |
aagtaacaacattaagttcaactc-ttgttttatcattacagccaa |
30132391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 338
Target Start/End: Original strand, 29348695 - 29348978
Alignment:
| Q |
55 |
tgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcattatattgtagctacgaagatcaatagtcactccgt |
154 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||| ||||| ||||| | || |||||||| ||||||||||| ||| || | ||||||||| |
|
|
| T |
29348695 |
tgcatttctttaaagagattcatggcttcatcaacctttttaatcttacaaaacccgttaatcatgatattgtagctctgaacattagcagtcactcccc |
29348794 |
T |
|
| Q |
155 |
tttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcac |
254 |
Q |
| |
|
|||||||||| |||||||||| ||||||| ||| ||| |||||| | | |||| ||||| |||||||| | | ||||||||||||||||||| | |
|
|
| T |
29348795 |
cctgagccatagtgttgaatatactcttagccttattcacttgtttaactaggcaatatccatccattaaagagcaataagtaacaacatcaggtttaat |
29348894 |
T |
|
| Q |
255 |
actttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaaccatcgatcaatatattaaa |
338 |
Q |
| |
|
| |||||| ||||| | ||| || ||| ||||| || ||||||| ||||||||||| || ||||| | ||||||| |||| |
|
|
| T |
29348895 |
gccttgtttcatcatcatagctaacacatttttagcttctttcacccttccttccttacaaaatccatcaaccaatatactaaa |
29348978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 339
Target Start/End: Complemental strand, 29084920 - 29084636
Alignment:
| Q |
55 |
tgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcattatattgtagctacgaagatcaatagtcactccgt |
154 |
Q |
| |
|
|||||||| ||||||||| ||| ||||| ||| ||| ||||| ||||| | |||||||||| |||||||| || |||| |||| | |||||||| |
|
|
| T |
29084920 |
tgcatttcattaaagagattcatagctttatcgacctttttaatcttacaaaacccattaatcaagatattgtaactgcgaatatcaggattcactccgc |
29084821 |
T |
|
| Q |
155 |
tttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcac |
254 |
Q |
| |
|
||||||||||| |||||||||| ||||| | ||| ||| |||||| | | |||| ||||| |||||||| || ||||||||||||||||| | | |
|
|
| T |
29084820 |
cttgagccatagtgttgaatatactcttagccgtattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtatgat |
29084721 |
T |
|
| Q |
255 |
actttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaaccatcgatcaatatattaaaa |
339 |
Q |
| |
|
| |||||| ||||| | ||| || ||| |||||||| |||||| | | |||||||| || ||||| | ||||||||||||| |
|
|
| T |
29084720 |
gccttgtttcatcatcatagcaaacacagttttaccttctttcatctttctgtccttacaaaatccatcaaccaatatattaaaa |
29084636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 30028786 - 30028695
Alignment:
| Q |
309 |
cttacataaaccatcgatcaatatattaaaactacaaacatttgggacaatgtttttcaatctcatttcattaaacaaacgaatagcatctt |
400 |
Q |
| |
|
|||||| || ||||| ||||||||||||||| || |||||| ||| ||||||||||||| |||||||||||||||| | || |||||||| |
|
|
| T |
30028786 |
cttacacaacccatcaatcaatatattaaaagtataaacatccgggtcaatgtttttcaacatcatttcattaaacaacctaacagcatctt |
30028695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 24730756 - 24730693
Alignment:
| Q |
56 |
gcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcat |
119 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
24730756 |
gcatttcttcaaagagatttacagcttcatccaccattttaatcttacataatccattaatcat |
24730693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 339
Target Start/End: Complemental strand, 29073563 - 29073381
Alignment:
| Q |
157 |
tgagccatagcgttgaatata-tatctagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcaca |
255 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||||| ||| ||| |||||| | | |||| ||||| |||||||| | | |||||||||||| |||||| | |
|
|
| T |
29073563 |
tgagccatagtgttgaatatactat-tagccttattcacttgtttaactaggcaatatccatccattaaagagcaataagtaacaacattaggtttaatg |
29073465 |
T |
|
| Q |
256 |
ctttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaaccatcgatcaatatattaaaa |
339 |
Q |
| |
|
| |||||| ||||| | ||| || ||| |||||||| |||||| | || |||||||| || ||||| | ||||||||||||| |
|
|
| T |
29073464 |
ccttgtttcatcatcatagcaaacacagttttaccttctttcatctttccgtccttacaaaatccatcaaccaatatattaaaa |
29073381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 339
Target Start/End: Complemental strand, 29106136 - 29105954
Alignment:
| Q |
157 |
tgagccatagcgttgaatata-tatctagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcaca |
255 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||||| ||| ||| |||||| | | |||| ||||| |||||||| | | |||||||||||| |||||| | |
|
|
| T |
29106136 |
tgagccatagtgttgaatatactat-tagccttattcacttgtttaactaggcaatatccatccattaaagagcaataagtaacaacattaggtttaatg |
29106038 |
T |
|
| Q |
256 |
ctttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaaccatcgatcaatatattaaaa |
339 |
Q |
| |
|
| |||||| ||||| | ||| || ||| |||||||| |||||| | || |||||||| || ||||| | ||||||||||||| |
|
|
| T |
29106037 |
ccttgtttcatcatcatagcaaacacagttttaccttctttcatctttccgtccttacaaaatccatcaaccaatatattaaaa |
29105954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 24898016 - 24897915
Alignment:
| Q |
18 |
actgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatc |
117 |
Q |
| |
|
|||||||| || | ||||||||| ||| |||| || |||| |||||| |||||| | ||||||||||||||||||||| ||||| || ||| |||||| |
|
|
| T |
24898016 |
actgtatgctacaatatcaggagccatgttttttaaatgcaattctttgaagagattgacagcttcatccaccattttattcttacataatccgttaatc |
24897917 |
T |
|
| Q |
118 |
at |
119 |
Q |
| |
|
|| |
|
|
| T |
24897916 |
at |
24897915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 30134911 - 30134832
Alignment:
| Q |
198 |
tttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagcca |
277 |
Q |
| |
|
||||||||||||||| | ||| |||||| ||||| |||||||||||| ||||| ||| | ||||||| ||||| ||||| |
|
|
| T |
30134911 |
tttaaccaagaaatatctatccattaaaaaactataagtaacaacattaggttccacgccatgttttaacataatagcca |
30134832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 30135048 - 30134986
Alignment:
| Q |
34 |
tcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccatttta |
96 |
Q |
| |
|
||||||||||| |||||| | |||||||| || |||||| |||| |||||||| ||||||||| |
|
|
| T |
30135048 |
tcaggagtcattcttttggaatgcatttcgtttaagagattcacggcttcatcaaccatttta |
30134986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 383
Target Start/End: Complemental strand, 29902999 - 29902830
Alignment:
| Q |
214 |
ccatctattaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttac |
313 |
Q |
| |
|
||||| |||||||| || |||||||||| |||||||| | | |||||| ||||| | ||| || ||| ||||| || ||||||| |||||||||| |
|
|
| T |
29902999 |
ccatccattaaagagttataagtaacaacgtcaggtttgatgccttgtttcatcatcatagctaacacatttttagcttctttcacccttccttccttac |
29902900 |
T |
|
| Q |
314 |
ataaaccatcgatcaatatattaaaactacaaacatttgggacaatgtttttcaatctcatttcattaaa |
383 |
Q |
| |
|
| |||||||| | ||||||| ||||| || | ||||||||| ||||||| ||| |||||| |||||| |
|
|
| T |
29902899 |
aaaaaccatcaaccaatatagtaaaagtatacacatttgggttgatgttttcgaatatcattttattaaa |
29902830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 29946339 - 29946262
Alignment:
| Q |
55 |
tgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcattatattgtagcta |
132 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||||||||||| ||||| | |||||||||||| ||| | |||||| |
|
|
| T |
29946339 |
tgcatttcttcaaagagattcatggcttcatccaccattttaatcttacaaaatccattaatcatgataatatagcta |
29946262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 30028887 - 30028851
Alignment:
| Q |
208 |
aaatacccatctattaaagaactacaagtaacaacat |
244 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
30028887 |
aaatacccatccattaaagaactataagtaacaacat |
30028851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 30060259 - 30060335
Alignment:
| Q |
55 |
tgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcattatattgtagct |
131 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||| ||| ||||| ||||| | ||||||||||||||||||||||| |
|
|
| T |
30060259 |
tgcatttcttcaaagagattcatggcttcatcgacctttttaatcttacaaaacccattaatcattatattgtagct |
30060335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 44262655 - 44262974
Alignment:
| Q |
20 |
tgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcat |
119 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| | ||||| |||||| |||||| | || ||||||||||||||||| ||||| | |||||||||||| |
|
|
| T |
44262655 |
tgtatgttatagtatcgggagccatgttttttatttgcagttctttgaagagattgacggcttcatccaccatttttttcttacacaatccattaatcat |
44262754 |
T |
|
| Q |
120 |
tatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatct |
219 |
Q |
| |
|
| | ||||||| ||| | | | ||||||| || |||| |||| |||||||| |||| | ||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
44262755 |
aacactgtagctttgaacactaggaatcactccacttcgagcaatagtgttgaatacatatgtggccttgttcacttctttaaccaagaaatacccatcc |
44262854 |
T |
|
| Q |
220 |
attaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaac |
319 |
Q |
| |
|
|| |||||| || |||||| || |||||| | ||||| |||||||||||||||||| || ||| || || || ||| || || |||||||||||||||| |
|
|
| T |
44262855 |
atcaaagaaatataagtaaaaatatcaggatccacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaac |
44262954 |
T |
|
| Q |
320 |
catcgatcaatatattaaaa |
339 |
Q |
| |
|
|||| | |||| |||||||| |
|
|
| T |
44262955 |
catcaaccaatgtattaaaa |
44262974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 43931 - 44249
Alignment:
| Q |
20 |
tgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcat |
119 |
Q |
| |
|
||||||||| ||| | |||| |||| ||||| | ||||||||||| |||||| | || |||||||||||||||||| ||| | | ||| |||||||| |
|
|
| T |
43931 |
tgtatgttacagtgttaggaaccatatttttggaatgcatttctttgaagagattaactgcttcatccaccattttattcttgcaaaatccgttaatcat |
44030 |
T |
|
| Q |
120 |
tatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatct |
219 |
Q |
| |
|
| | ||||||| ||| ||||| || |||||| || ||| |||| |||||||| |||| | ||||||||| ||| ||||||| ||||| ||||||| |
|
|
| T |
44031 |
aacactgtagctctgaacatcaagagccactccccttctagcaatagtgttgaatacatatgtggccttgttcacttctttaaccgagaaacacccatcc |
44130 |
T |
|
| Q |
220 |
attaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaac |
319 |
Q |
| |
|
|||||||||||| ||||| ||| || |||| ||| | ||||||||||||||||||||| ||| || || || |||||| || || |||||||||||| |
|
|
| T |
44131 |
attaaagaactataagtagcaatattgggttccacgccttgttttatcataacagccaacacatttctagcttttttcacctctccatccttacataaaa |
44230 |
T |
|
| Q |
320 |
catcgatcaatatattaaa |
338 |
Q |
| |
|
|||| ||||| ||| |||| |
|
|
| T |
44231 |
catcaatcaaaatactaaa |
44249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 339
Target Start/End: Complemental strand, 24226757 - 24226438
Alignment:
| Q |
20 |
tgtatgttatagtatcaggagtcatacttttgaattgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcat |
119 |
Q |
| |
|
|||||| || ||| |||||| |||| ||||| | ||||||||||| || ||| | | |||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
24226757 |
tgtatgctacagtgtcaggaaccatatttttggaatgcatttctttgaaaagatttgcggcttcatccaccattttattcttacataatccattaatcat |
24226658 |
T |
|
| Q |
120 |
tatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatct |
219 |
Q |
| |
|
| ||||||||||||| || | ||||| ||| || ||| |||| |||||||| | | | |||||||| ||| ||||||||||||||||||||| |
|
|
| T |
24226657 |
gactttgtagctacgaacattaggagtcattccccttagagaaatagtgttgaataactgtttggccttgttgacttctttaaccaagaaatacccatcc |
24226558 |
T |
|
| Q |
220 |
attaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaac |
319 |
Q |
| |
|
|| |||||| || ||||||||| || ||||| ||||| |||||||||||||| |||||| ||| || || || ||| || || || ||||||||||| | |
|
|
| T |
24226557 |
atcaaagaattataagtaacaatattaggttccacacgttgttttatcataatagccaacacatttctagcttttttgacctctccatccttacataacc |
24226458 |
T |
|
| Q |
320 |
catcgatcaatatattaaaa |
339 |
Q |
| |
|
|||||| |||| || ||||| |
|
|
| T |
24226457 |
catcgaccaatgtagtaaaa |
24226438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 177
Target Start/End: Original strand, 24219332 - 24219454
Alignment:
| Q |
55 |
tgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcattatattgtagctacgaagatcaatagtcactccgt |
154 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||||||| ||||| | |||| ||||||| ||| |||| ||| ||| ||| || |||||| |
|
|
| T |
24219332 |
tgcatttcttcaaagagtttcatggcttcatccaccattttaatcttacaaaatccactaatcatgatactgtaactatgaacgtcaggagccactccaa |
24219431 |
T |
|
| Q |
155 |
tttgagccatagcgttgaatata |
177 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
24219432 |
tttgagccatagtgttgaatata |
24219454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 16350703 - 16350607
Alignment:
| Q |
304 |
ccttccttacataaaccatcgatcaatatattaaaactacaaacatttgggacaatgtttttcaatctcatttcattaaacaaacgaatagcatctt |
400 |
Q |
| |
|
||||||||||| | | |||| | ||||||||||||| || || ||| |||| |||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
16350703 |
ccttccttacaaagagcatcaaccaatatattaaaagtataagcatctgggttgatgtttttcattaccatttcattaaacaaacgaaatgcatctt |
16350607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 339
Target Start/End: Original strand, 15062973 - 15063257
Alignment:
| Q |
55 |
tgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcattatattgtagctacgaagatcaatagtcactccgt |
154 |
Q |
| |
|
|||||||||| |||||| ||| |||||||| ||||||||| ||||| | |||||||||||| ||| ||||||| | || ||| ||| ||||| |
|
|
| T |
15062973 |
tgcatttcttcaaagagcttcatggcttcatctaccattttaatcttacaaaatccattaatcatgatactgtagctccaaacgtcaggagttactcccc |
15063072 |
T |
|
| Q |
155 |
tttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcac |
254 |
Q |
| |
|
||||||||||| ||||||||| | | ||||||||| ||| |||||| ||| |||| ||||| |||||||| || |||||||||||||| |||| || |
|
|
| T |
15063073 |
tttgagccataacgttgaataaactcttggccttgttcacttgtttaactaagcaatatccatccattaaagagttataagtaacaacatcaagttttac |
15063172 |
T |
|
| Q |
255 |
actttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaaccatcgatcaatatattaaaa |
339 |
Q |
| |
|
||| ||| ||||| ||||| || ||| ||||| || || |||| | ||||||||||| |||||||| ||||||||| ||||| |
|
|
| T |
15063173 |
gttttttttcatcatcacagctaacacatttttagcttctctcacctttccttccttacaaaaaccatcaatcaatatactaaaa |
15063257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 294
Target Start/End: Original strand, 32760455 - 32760563
Alignment:
| Q |
186 |
cttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaacactt |
285 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| | |||||| || || | |||||||| |||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
32760455 |
cttgttcacttccttaaccaagaaatacccatccgtcaaagaattataaatgacaacatctcgttttgcactttgttttatcataacagtcaaaacactt |
32760554 |
T |
|
| Q |
286 |
ttacctcct |
294 |
Q |
| |
|
||| ||||| |
|
|
| T |
32760555 |
ttagctcct |
32760563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 298
Target Start/End: Original strand, 53717 - 53936
Alignment:
| Q |
79 |
gcttcatccaccattttagccttacttagtccattaatcattatattgtagctacgaagatcaatagtcactccgttttgagccatagcgttgaatatat |
178 |
Q |
| |
|
|||| ||||||| ||||| ||||| | |||||||||||| |||||||||||| ||| || | ||||||||| | |||| ||||| ||||||||| | |
|
|
| T |
53717 |
gctttatccacctttttaatcttacaaaatccattaatcatgatattgtagctatgaacattagcagtcactcccctctgagacatagtgttgaatatct |
53816 |
T |
|
| Q |
179 |
atctagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaa |
278 |
Q |
| |
|
||||||| ||| ||| |||||| | | |||| ||||| |||||||| | | |||||||||||| |||||| | | |||||| ||||| | ||| || |
|
|
| T |
53817 |
tcttagccttattcacttgtttaactaggcaatatccatccattaaagagcaataagtaacaacattaggtttaatgccttgtttcatcatcatagcaaa |
53916 |
T |
|
| Q |
279 |
aacacttttacctcctttca |
298 |
Q |
| |
|
||| |||||||| |||||| |
|
|
| T |
53917 |
cacagttttaccttctttca |
53936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 400
Target Start/End: Complemental strand, 8718 - 8552
Alignment:
| Q |
234 |
agtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaaccatcgatcaatata |
333 |
Q |
| |
|
|||||||| || |||||||||| |||||| | ||| | ||| || ||| ||||| || |||||| | ||||||||||| | | |||| | ||||||| |
|
|
| T |
8718 |
agtaacaatgtctggtttcacaccttgtttcaccatcatagctaacacatttttagcttctttcatttttccttccttacagagagcatcaaccaatata |
8619 |
T |
|
| Q |
334 |
ttaaaactacaaacatttgggacaatgtttttcaatctcatttcattaaacaaacgaatagcatctt |
400 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
8618 |
ttaaaagtataaacatttgggttgatgtttttcaataccatttcattgaacaaacgaaatgcatctt |
8552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 20888627 - 20888440
Alignment:
| Q |
65 |
taaagagaatcacagcttcatccaccattttagccttacttagtccattaatcattatattgtagctacgaagatcaatagtcactccgttttgagccat |
164 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||| |||| || | | |||||||| | |||||||||| || || | ||||||||| || | |||| |
|
|
| T |
20888627 |
taaagacaatcataacttcatccaccattttattcttatataatacgttaatcatgacattgtagctatcaacattataagtcactccccttcaaaccat |
20888528 |
T |
|
| Q |
165 |
agcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcaca |
255 |
Q |
| |
|
| |||||||| |||| | || ||| || | | ||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| |
|
|
| T |
20888527 |
attgttgaatacatatgtggctttggtcacatctttaaccaagaaataccca---attaaagaactataagtaacaacattaggtttcaca |
20888440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 269
Target Start/End: Complemental strand, 22245 - 22031
Alignment:
| Q |
55 |
tgcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcattatattgtagctacgaagatcaatagtcactccgt |
154 |
Q |
| |
|
||||||||||| || || ||| |||||||||||||||||| ||||| | |||||||||||| ||||||||||| ||| || | |||||| || |
|
|
| T |
22245 |
tgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatattgtagctctgaacattagcagtcacacccc |
22146 |
T |
|
| Q |
155 |
tttgagccatagcgttgaatata-tatctagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttca |
253 |
Q |
| |
|
| |||| ||||| |||||||||| | || ||||||||| ||| || |||| |||| ||||| |||||||| || ||||||||||||||||||| | |
|
|
| T |
22145 |
tatgagacatagtgttgaatatactctc-ggccttgttcacttcatttaccagacaatatccatccattaaagagctgtaagtaacaacatcaggtttaa |
22047 |
T |
|
| Q |
254 |
cactttgttttatcat |
269 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
22046 |
tgctttgtttcatcat |
22031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 13093789 - 13093872
Alignment:
| Q |
239 |
caacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaaccat |
322 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||| |||||| ||| |||||||| ||| | ||||||||||||||||| |
|
|
| T |
13093789 |
caacatctggttccacactttgtcatatcataacagctaaaacatacttaggtcctttcatatctctttccttacataaaccat |
13093872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 388
Target Start/End: Original strand, 43619 - 43717
Alignment:
| Q |
290 |
ctcctttcacatcaccttccttacataaaccatcgatcaatatattaaaactacaaacatttgggacaatgtttttcaatctcatttcattaaacaaac |
388 |
Q |
| |
|
|||||||||||| ||||||||||| | | |||| | ||||||||||||| || | ||||||||| |||||||||||| |||||||| ||||||| |
|
|
| T |
43619 |
ctcctttcacatttccttccttacaaagagcatcaaccaatatattaaaagtatacacatttgggttgatgtttttcaataccatttcatggaacaaac |
43717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 388
Target Start/End: Original strand, 50836 - 50934
Alignment:
| Q |
290 |
ctcctttcacatcaccttccttacataaaccatcgatcaatatattaaaactacaaacatttgggacaatgtttttcaatctcatttcattaaacaaac |
388 |
Q |
| |
|
|||||||||||| ||||||||||| | | |||| | ||||||||||||| || ||||||||||| |||||| ||||| |||||||| ||||||| |
|
|
| T |
50836 |
ctcctttcacatttccttccttacaaagagcatcaaccaatatattaaaagtataaacatttgggtggatgtttgtcaatagcatttcatggaacaaac |
50934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 400
Target Start/End: Original strand, 126400 - 126565
Alignment:
| Q |
235 |
gtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaaccatcgatcaatatat |
334 |
Q |
| |
|
||||||||||| || |||||| || ||| ||||| ||||| | ||||||||| || |||||| | ||||||||||||| | |||| | || ||||| |
|
|
| T |
126400 |
gtaacaacatcgggcatcacacattctttcatcatcacagctatcacacttttagcttctttcatctttccttccttacatagagcatcaaccattatat |
126499 |
T |
|
| Q |
335 |
taaaactacaaacatttgggacaatgtttttcaatctcatttcattaaacaaacgaatagcatctt |
400 |
Q |
| |
|
||||| || |||||| |||| |||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
126500 |
taaaagtataaacatctgggttgatgtttttcaatactatttcatggaacaaacgaaacgcatctt |
126565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 369
Target Start/End: Complemental strand, 137275 - 136962
Alignment:
| Q |
56 |
gcatttctttaaagagaatcacagcttcatccaccattttagccttacttagtccattaatcattatattgtagctacgaagatcaatagtcactccgtt |
155 |
Q |
| |
|
||||||| ||||||||| ||| |||||||| ||||||||| ||||| | |||||||||||| ||||| ||||| || |||| || |||||| | |
|
|
| T |
137275 |
gcatttcattaaagagactcaaagcttcattgaccattttaatcttacagaatccattaatcatgatattatagctctgagcatcaggagccactcccat |
137176 |
T |
|
| Q |
156 |
ttgagccatagcgttgaatatatatctagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcaca |
255 |
Q |
| |
|
| |||| |||| | | || | || | | ||||| ||| ||| ||||| | | |||||||||| ||||| ||| | | ||||||||||| ||||| | | |
|
|
| T |
137175 |
tcgagcaatagtgcttaaaacatgtttggccttattcacttcattaactaggcaatacccatccattaatgaattgtatgtaacaacatctggttttata |
137076 |
T |
|
| Q |
256 |
ctttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaaccatcgatcaatatattaaaactacaaacatttggga |
355 |
Q |
| |
|
||| ||| ||||| | |||||| || | ||| |||||||||||| |||||||| || | | |||| | ||||||||||||| || || |||||||| |
|
|
| T |
137075 |
cttcctttgatcatcatagccaacgcattcttagctcctttcacatttccttccttgcaaagagcatcaaccaatatattaaaagtataatcatttgggt |
136976 |
T |
|
| Q |
356 |
caatgtttttcaat |
369 |
Q |
| |
|
|||||||||||| |
|
|
| T |
136975 |
tgatgtttttcaat |
136962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 400
Target Start/End: Complemental strand, 140020 - 139855
Alignment:
| Q |
235 |
gtaacaacatcaggtttcacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaaccatcgatcaatatat |
334 |
Q |
| |
|
||||||||||| ||| | |||| || ||| |||||||| || || | | | ||| || |||||||||| ||||| ||||| | | |||| | |||||||| |
|
|
| T |
140020 |
gtaacaacatccggtattacaccttctttcatcataacggctaacagattcttagctactttcacatctccttctttacaaagagcatcaaccaatatat |
139921 |
T |
|
| Q |
335 |
taaaactacaaacatttgggacaatgtttttcaatctcatttcattaaacaaacgaatagcatctt |
400 |
Q |
| |
|
||||| || |||||| | || |||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
139920 |
taaaagtataaacatctcggttgatgtttttcaataccatttcatggaacaaacgaaatgcatctt |
139855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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