View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9655H-LTR4-TNT-insertion-7 (Length: 562)
Name: F9655H-LTR4-TNT-insertion-7
Description: F9655H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9655H-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 12 - 554
Target Start/End: Complemental strand, 8840911 - 8840369
Alignment:
| Q |
12 |
caagacgtgacttggcgaggtttatctctgtcttcaactcttctgaggactcttctgggaagagtccgtccaacttcggtatcacatctctaagagtttc |
111 |
Q |
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| T |
8840911 |
caagacgtgacttggcgaggtttatctctgtcttcaactcttctgaggactcttctgggaagagtccgtccaacttcggtatcacatctctaagagtttc |
8840812 |
T |
|
| Q |
112 |
gtacatgtcaagcaatttaaacagtttctctccagcacgcttcgtcatggcagcgccttccgcgaagttgagaagcggaatcacaactccgcgagagacg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8840811 |
gtacatgtcaagcaatttaaacagtttctctccagcacgcttcgtcatggcagcgccttccgcgaagttgagaagcggaatcacaactccgcgagagacg |
8840712 |
T |
|
| Q |
212 |
ctgctgaacagacctgctgcaacagacgggttactcgagaacaccgcctctgctagtttcctctccccggggaaatacagcatggtacactgacggaacg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8840711 |
ctgctgaacagacctgctgcaacagacgggttactcgagaacaccgcctctgctagtttcctctccccggggaaatacagcatggtacactgacggaacg |
8840612 |
T |
|
| Q |
312 |
tgttagtccatgccggaatcatgtctcttgcaagaatctcccattgcaccttctgaacaatatcatcaatactgattctttccagccccagctgctgttg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8840611 |
tgttagtccatgccggaatcatgtctcttgcaagaatctcccattgcaccttctgaacaatatcatcaatactgattctttccagccccagctgctgttg |
8840512 |
T |
|
| Q |
412 |
aatctcctcgaacgcggtccttctcgccacaatgtacacctgacaacactcactttcatatcctccgatcaacatctcccccacaatcttgctcatacaa |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8840511 |
aatctcctcgaacgcggtccttctcgccacaatgtacacctgacaacactcactttcatatcctccgatcaacatctcccccacaatcttgctcatacaa |
8840412 |
T |
|
| Q |
512 |
acaatcgcctcatcaggataaccaggaaaattcgtttcgaatt |
554 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8840411 |
acaatcgcctcatcaggataaccaggaaaattcgtttcgaatt |
8840369 |
T |
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