View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9659H-LTR4-TNT-insertion-1 (Length: 260)
Name: F9659H-LTR4-TNT-insertion-1
Description: F9659H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9659H-LTR4-TNT-insertion-1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 45756078 - 45756320
Alignment:
| Q |
8 |
aattgaaggaggctagtgttaattatgaagcaacgaaacgaaagcatggaccaaaaagtacgagttaaatacaatttaggcaccaaaataattaaattgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45756078 |
aattgaaggaggctagtgttaattatgaagcaacgaaacgaaagcatggaccaaaaagtacgagttaaatacaatttaggcaccaaaataattaaattgt |
45756177 |
T |
|
| Q |
108 |
aggagtaccagttattgacaataatagtaccaattagtacaaagaaggcattatataataaagcatgtatgcgtttgggtaaatgaagttgaagcactaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45756178 |
aggagtaccagttattgacaataatagtaccaattagtacaaagaaggcattatataataaagcatgtatgcgtttgggtaaatgaagttgaagcactaa |
45756277 |
T |
|
| Q |
208 |
ttaagatccgaaacgagtttcatcttctggcgatgaatgaatt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45756278 |
ttaagatccgaaacgagtttcatcttctggcgatgaatgaatt |
45756320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 919 times since January 2019
Visitors: 1114