View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9659H-LTR4-TNT-insertion-3 (Length: 317)
Name: F9659H-LTR4-TNT-insertion-3
Description: F9659H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9659H-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 35791501 - 35791209
Alignment:
| Q |
17 |
caaaccaagcaactcacttgcgtttttcacctcctttctacatggagaaacacctccttctacaaaataataataattcgaataactaatcatattgggt |
116 |
Q |
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| T |
35791501 |
caaaccaagcaactcacttgcgtttttcacctcctttctacatggagaaacacctccttctacaaaataataataattcgaataactaatcatattgggt |
35791402 |
T |
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| Q |
117 |
acatgttatgtgaccccgtatgaaaattttgctattacatagcaatagctaatagtctaatcatgtctaatatgacaagtattccaagataacgaataaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791401 |
acatgttatgtgaccccgtatgaaaattttgctattacatagcaatagctaatagtctaatcatgtctaatatgacaagtattccaagataacgaataaa |
35791302 |
T |
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| Q |
217 |
gagttttttgctcacggcctaccaaagcgttatgttattttactcttgagatcctatgcattgtcaatgcaatatactactaatatcttatta |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791301 |
gagttttttgctcacggcctaccaaagcgttatgttattttactcttgagatcctatgcattgtcaatgcaatatactactaatatcttatta |
35791209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 35782191 - 35782045
Alignment:
| Q |
67 |
cacctccttctacaaaataataataattcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct |
166 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
35782191 |
cacctccttctacaaaataataat---tcgaataactaatcatattgagtacatgttatgtgaccccatatgaaaattttgctattacatagcaataact |
35782095 |
T |
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| Q |
167 |
aatagtctaatcatgtctaatatgacaagtattccaagataacgaataaag |
217 |
Q |
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| T |
35782094 |
aatagtctgatcatgtc-aatatggcaagtattacaagataacgaataaag |
35782045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 35785056 - 35784976
Alignment:
| Q |
88 |
aataattcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagctaa |
168 |
Q |
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|||||||||||||| |||| ||||||| ||||||||| ||||| | ||||||||||| ||||||||||| |||||||||| |
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| T |
35785056 |
aataattcgaataattaattatattggatacatgttacgtgactcgatatgaaaatttagctattacataccaatagctaa |
35784976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 35781013 - 35780954
Alignment:
| Q |
250 |
gttattttactcttgagatcctatgcattgtcaatgcaatatactactaatatcttatta |
309 |
Q |
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|||||||||||||| | ||||||| |||||| |||||||||||||| ||||||||||||| |
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| T |
35781013 |
gttattttactcttcatatcctatccattgtgaatgcaatatactagtaatatcttatta |
35780954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 35782218 - 35782183
Alignment:
| Q |
17 |
caaaccaagcaactcacttgcgtttttcacctcctt |
52 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
35782218 |
caaaccaagcaactcacttgtgtttttcacctcctt |
35782183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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