View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9668H-LTR4-TNT-insertion-2 (Length: 788)
Name: F9668H-LTR4-TNT-insertion-2
Description: F9668H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9668H-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 757; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 15 - 779
Target Start/End: Complemental strand, 50159997 - 50159233
Alignment:
| Q |
15 |
aaacagagagatgcattcttcatttaggatgtatcagtaaccattattagtaaatttgctttgacagaaaatagagccatcttttaaaacataagatgga |
114 |
Q |
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| T |
50159997 |
aaacagagagatgcattcttcatttaggatgtatcagtaaccattattagtaaatttgctttgacagaaaatagagccatcttttaaaacataagatgga |
50159898 |
T |
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| Q |
115 |
gaatgaatttcaccgtcaagtcaaccaatcaagcagacccatcttttaaaccatttggttacattataatcaatcatatgtgcgattttaaaagataatt |
214 |
Q |
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| T |
50159897 |
gaatgaatttcaccgtcaagtcaaccaatcaagcagacccatcttttaaaccatttggttacattataatcaatcatatgtgcgattttaaaagataatt |
50159798 |
T |
|
| Q |
215 |
acgattaaagtcaacagattttgaagaaaacaaggaataaggaagtagtggtgttatagtacttacaatgcaatattgaagaaaacaaggaaagtggtgt |
314 |
Q |
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| T |
50159797 |
acgattaaagtcaacagattttgaagaaaacaaggaataaggaagtagtggtgttatagtacttacaatgcaatattgaagaaaacaaggaaagtggtgt |
50159698 |
T |
|
| Q |
315 |
gtttaaagagaaccccttgtggaacagactttccttggtaagggtaaaaaagggaaagatatccaacgactgttgatgcgatgagaaatgcaacagaaag |
414 |
Q |
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| T |
50159697 |
gtttaaagagaaccccttgtggaacagactttccttggtaagggtaaaaaagggaaagatatccaacgactgttgatgcgatgagaaatgcaacagaaag |
50159598 |
T |
|
| Q |
415 |
ataacctaatgcaactgttggatcggaagggaacttgcaggtcacaccatccttcacagctattggtgtaccagaagcaggctacaaattacaatccaaa |
514 |
Q |
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| T |
50159597 |
ataacctaatgcaactgttggatcggaagggaacttgcaggtcacaccatccttcacagctattggtgtaccagaagcaggctacaaattacaatccaaa |
50159498 |
T |
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| Q |
515 |
tgattacaatttgagtaacagagagagagaatagataaattaaagtcaaaagttgattagataatattgacgcgacatactttacacaaagataaataat |
614 |
Q |
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| T |
50159497 |
tgattacaatttgagtaacagagagagagaatagataaattaaagtcaaaagttgattagataatattgacgcgacatactttacacaaagataaataat |
50159398 |
T |
|
| Q |
615 |
tgatttttgatgaaaaagtaagaaagagtaatgctacctttttgttttcggcaataacaccgagtatgaaagagacgaaaccaagtaacgaaacagcgag |
714 |
Q |
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| T |
50159397 |
tgatttttgatgaaaaagtaagaaagagtaatgctacctttttgttttcggcaataacaccgagtatgaaagagacgaaaccaagtaacgaaacagcgag |
50159298 |
T |
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| Q |
715 |
agccatgtgtttggtggaggccgccatgacttcgcactgtaacagaaaacaagcaattttaatta |
779 |
Q |
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| T |
50159297 |
agccatgtgtttgatggaggcagccatgacttcgcactgtaacagaaaacaagcaattttaatta |
50159233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 659 - 727
Target Start/End: Original strand, 22988555 - 22988628
Alignment:
| Q |
659 |
ttttcggcaataacaccgagtatgaaagagacgaaa-----ccaagtaacgaaacagcgagagccatgtgtttg |
727 |
Q |
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|||||||| |||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| |
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| T |
22988555 |
ttttcggctataacaccgagtatgaaagagaagagatgacaccaagtaacgaaacagcgagagccatgtgtttg |
22988628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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