View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5-7-2 (Length: 339)
Name: J5-7-2
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-2 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 70 - 339
Target Start/End: Complemental strand, 11025172 - 11024903
Alignment:
| Q |
70 |
attaattaaacagatatagtgcaacccaaaattatcctcaatatcatcataaacattaaagttgttgaaagagtagaaaataagaaaaccatttgatatg |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11025172 |
attaattaaacagatatagtgcaacccaaaattatcctcaatatcatcataaacattaaagttgttgaaagagtagaaaataagaaaaccatttgatatg |
11025073 |
T |
|
| Q |
170 |
taagaaaatatatgcataataacattatgaactgtgttatagttacagaagtcccatccttacattgctgtgtttatttgaccatttagatccatcgacg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11025072 |
taagaaaatatatgcataataacattatgaactgtgttatagttacagaagtcccatccttacattgctgtgtttatttgaccatttagatccatcgacg |
11024973 |
T |
|
| Q |
270 |
acaaacaacttccttgctggaaacttgagggaggcagcgagttcctcaattttctctgagttgaccttca |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11024972 |
acaaacaacttccttgctggaaacttgagggaggcagcgagttcctcaattttctctgagttgaccttca |
11024903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11024907 - 11024832
Alignment:
| Q |
1 |
cttcaggcagctggtaaccagatcattgtgaggggaatgatattataaacaaataaagtacatgcttacattaatt |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11024907 |
cttcaggcagctggtaaccagatcattgtgaggggaatgatattataaacaaataaagtacatgcttacattaatt |
11024832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 29810838 - 29810905
Alignment:
| Q |
258 |
gatccatcgacgacaaacaacttccttgctggaaacttgagggaggcagcgagttcctcaattttctc |
325 |
Q |
| |
|
|||||||| || |||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |
|
|
| T |
29810838 |
gatccatcaacaacaaacaacttctttaatggaaaattgagggaggaagcaagtttctcaattttctc |
29810905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University