View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-7-96 (Length: 647)
Name: J5-7-96
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-96 |
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| [»] scaffold0021 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 42763341 - 42762889
Alignment:
| Q |
1 |
gtcagttcaaagatagaccnnnnnnntattaacaaaatccatcatgaaagaatacatgaaagaagcaaaatcaaccattttctcnatgctgtatcgcaag |
100 |
Q |
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| T |
42763341 |
gtcagttcaaagatagaccaaaaaaatattaacaaaatccatcatgaaagaatacatgaaagaagcaaaatcaaccattttctcaatgctgtatcgcaag |
42763242 |
T |
|
| Q |
101 |
gcagtaatcacgtcattcttagtcacctataaaacgtaaatagcactcaattaaagacggcaatgccaagaagcacaaaaattgtgtacaaaaacataat |
200 |
Q |
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| T |
42763241 |
gcagtaatcacgtcattcttagtcacctataaaacgtaaatagcactcaattaaagacggcaatgccaagaagcacaaaaattgtgtacaaaaacataat |
42763142 |
T |
|
| Q |
201 |
taacttcatatatatctctataatctaacctttctatcccgatcatcaacaactccacgtgctatttctctcatcatcactaaagaatgaacttgctggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763141 |
taacttcatatatatctctataatctaacctttctatcccgatcatcaacaactccacgtgctatttctctcatcatcactaaagaatgaacttgctggt |
42763042 |
T |
|
| Q |
301 |
tatctaaattcaccgaagacattgaattgattccttccaaaatcttatgacacccactcttaattatctctttgtgatgctccatnnnnnnnctggcaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42763041 |
tatctaaattcaccgaagacattgaattgattccttccaaaatcttatgacacccactcttaattatctctttgtgatgctccataaaaaaactggcaaa |
42762942 |
T |
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| Q |
401 |
tgtgacaaaccaaaataacccagatgaaaattttcactcaaagcagcattaat |
453 |
Q |
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| T |
42762941 |
tgtgacaaaccaaaataacccagatgaaaattttcactcaaagcagcattaat |
42762889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 443 - 647
Target Start/End: Complemental strand, 42763540 - 42763337
Alignment:
| Q |
443 |
gcagcattaatcccttacttggtcggcaagtaactcaggcctagctattgcanctctaggttgctcatcaacaatcccacgagcaatttctttcatcccc |
542 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
42763540 |
gcagtattaatcccttacttggtcggcaagtaactcaggcctagctattgcaactctaggttgctcatcaacaatcccatgagcaatttctttcatcctc |
42763441 |
T |
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| Q |
543 |
aatactaaatgcatcctctggtcatccaagccttccataggacatcctacttaacatatgaacgatatctctggnngcacccacctgcaaactgccccag |
642 |
Q |
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| T |
42763440 |
aatactaaatgcatcctctggtcatccaagcctt-cataggacatcctacttaacatatgaacgatatctctggatgcacacacctgcaaactgcctcaa |
42763342 |
T |
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| Q |
643 |
gtcag |
647 |
Q |
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||||| |
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| T |
42763341 |
gtcag |
42763337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 177; Significance: 4e-95; HSPs: 2)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 27 - 385
Target Start/End: Complemental strand, 115082 - 114744
Alignment:
| Q |
27 |
tattaacaaaatccatcatgaaagaatacatgaaagaagcaaaatcaaccattttctcnatgctgtatcgcaaggcagtaatcacgtcattcttagtcac |
126 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
115082 |
tattaacaaaatccatcatgaatgaatacatgaaagaagcaaaatcaaccattttctc-------------aaggcagtaatcacgtcattcttagtcac |
114996 |
T |
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| Q |
127 |
ctataaaacgtaaatagcactcaattaaagacggcaatgccaagaagcacaaaaattgtgtacaaaaacataattaacttcatatatatctctataatct |
226 |
Q |
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||||| || |||| ||||||| ||| ||||| || | |||| | |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
114995 |
ctatagaatgtaagcagcactcttctaatgacgg-------aataggcacgagaattgtgtacaaaaacataattaacttcttatatatctctataatct |
114903 |
T |
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| Q |
227 |
aacctttctatcccgatcatcaacaactccacgtgctatttctctcatcatcactaaagaatgaacttgctggttatctaaattcaccgaagacattgaa |
326 |
Q |
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|||||||||||| ||| || |||||||||||| ||||||||||||||| ||| ||| || ||||||||||||| ||||||||||||| ||||||||||| |
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| T |
114902 |
aacctttctatctcgaccaaaaacaactccacgcgctatttctctcatcgtcattaaggagtgaacttgctggtcatctaaattcaccaaagacattgaa |
114803 |
T |
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| Q |
327 |
ttgattccttccaaaatcttatgacacccactcttaattatctctttgtgatgctccat |
385 |
Q |
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|||||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |
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| T |
114802 |
ttgattccttccaaaatcttataatactcactcttaattatctctttgtgatgctccat |
114744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 439 - 540
Target Start/End: Complemental strand, 115230 - 115129
Alignment:
| Q |
439 |
caaagcagcattaatcccttacttggtcggcaagtaactcaggcctagctattgcanctctaggttgctcatcaacaatcccacgagcaatttctttcat |
538 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||| |||||||||||||||| |
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| T |
115230 |
caaagcagtattaatcccttacttggtcggcaagtaactcaggcctagctgttgcaactctaggttgcttctcaacaatcccatgagcaatttctttcat |
115131 |
T |
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| Q |
539 |
cc |
540 |
Q |
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|| |
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| T |
115130 |
cc |
115129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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