View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF-Insertion-12 (Length: 104)
Name: NF-Insertion-12
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF-Insertion-12 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 99; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-49
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 21197876 - 21197974
Alignment:
| Q |
6 |
catttagaaccatacttagctacacaatatgcgtcggttcgatccttcttcatcggggagagtcccacagcattcaagattcccaattccaaaacacca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21197876 |
catttagaaccatacttagctacacaatatgcgtcggttcgatccttcttcatcggggagagtcccacagcattcaagattcccaattccaaaacacca |
21197974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-49
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 27253718 - 27253816
Alignment:
| Q |
6 |
catttagaaccatacttagctacacaatatgcgtcggttcgatccttcttcatcggggagagtcccacagcattcaagattcccaattccaaaacacca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27253718 |
catttagaaccatacttagctacacaatatgcgtcggttcgatccttcttcatcggggagagtcccacagcattcaagattcccaattccaaaacacca |
27253816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University