View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF-Insertion-6 (Length: 400)

Name: NF-Insertion-6
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF-Insertion-6
NF-Insertion-6
[»] chr8 (6 HSPs)
chr8 (206-400)||(17575962-17576156)
chr8 (206-400)||(17072117-17072309)
chr8 (91-156)||(17071960-17072026)
chr8 (91-156)||(17576247-17576313)
chr8 (8-59)||(17070501-17070552)
chr8 (8-59)||(17577721-17577772)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 206 - 400
Target Start/End: Complemental strand, 17576156 - 17575962
Alignment:
Q  206 ttgcttataattaggatctcagagagaaattaaaaacctgcttttcatctaacaggacacgttttccgagatccgctgcattccggaaccttctacgggg 305  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17576156 ttgcctataatgaggatctcagagagaaattaaaaacctgcttttcatctaacaggacacgttttccgagatccgctgcattccggaaccttctacgggg 17576057  T
Q  306 attcttcaccagcgagacggcgcttctccaacggctcaacgcatctatactccgatccttatcctctaattcgaagtctttcagaaatccctcca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17576056 attcttcaccagcgagacggcgcttctccaacggctcaacgcatctatactccgatccttatcctctaattcgaagtctttcagaaatccctcca 17575962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 206 - 400
Target Start/End: Original strand, 17072117 - 17072309
Alignment:
Q  206 ttgcttataattaggatctcagagagaaattaaaaacctgcttttcatctaacaggacacgttttccgagatccgctgcattccggaaccttctacgggg 305  Q
    |||| |||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17072117 ttgcctataatgaggatctcagagagaaattaaaa--ctgcttttcatctaacaggacacgttttccgagatccgctgcattccggaacnttctacgggg 17072214  T
Q  306 attcttcaccagcgagacggcgcttctccaacggctcaacgcatctatactccgatccttatcctctaattcgaagtctttcagaaatccctcca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17072215 attcttcaccagcgagacggcgcttctccaacggctcaacgcatctatactccgatccttatcctctaattcgaagtctttcagaaatccctcca 17072309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 17071960 - 17072026
Alignment:
Q  91 gacacaaaaaactttggtttaaatttgagggaaatacattttaactt-ttgcttatattattattaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  17071960 gacacaaaaaactttggtttaaatttgagggaaatacattttaacttgttgcttatattataattaa 17072026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 17576313 - 17576247
Alignment:
Q  91 gacacaaaaaactttggtttaaatttgagggaaatacattttaactt-ttgcttatattattattaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  17576313 gacacaaaaaactttggtttaaatttgagggaaatacattttaacttgttgcttatattataattaa 17576247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 17070501 - 17070552
Alignment:
Q  8 ataggtccagagggtcaccccagaggattatgtaccccagaggatgtgatac 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17070501 ataggtccagagggtcaccccagaggattatgtaccccagaggatgtgatac 17070552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 17577772 - 17577721
Alignment:
Q  8 ataggtccagagggtcaccccagaggattatgtaccccagaggatgtgatac 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17577772 ataggtccagagggtcaccccagaggattatgtaccccagaggatgtgatac 17577721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University