View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF-Insertion-8 (Length: 348)
Name: NF-Insertion-8
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF-Insertion-8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 28 - 342
Target Start/End: Original strand, 10873239 - 10873549
Alignment:
| Q |
28 |
ccaaatgagtaatttcaacaaaaataaaagtagaacatataggagaaagttcaaagtttaaaattacttacttgttgaaagtgtgagatagggcatcaaa |
127 |
Q |
| |
|
||||||||||||||||||||||| | | ||| |||| | |||||||||||| || ||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
10873239 |
ccaaatgagtaatttcaacaaaatttatagtgaaacaga----agaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaa |
10873334 |
T |
|
| Q |
128 |
attttgtggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttatgacgggggctctcgtcattccatcacggaggacaact |
227 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |||||||||||||| |
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|
| T |
10873335 |
attttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacgactggggctcgggtcattccgtcacggaggacaacg |
10873434 |
T |
|
| Q |
228 |
gcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgc |
327 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || | |
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| T |
10873435 |
gcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcc |
10873534 |
T |
|
| Q |
328 |
cgtcaagcaacaaag |
342 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
10873535 |
cgtcgagcaacaaag |
10873549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 28 - 342
Target Start/End: Original strand, 10878310 - 10878620
Alignment:
| Q |
28 |
ccaaatgagtaatttcaacaaaaataaaagtagaacatataggagaaagttcaaagtttaaaattacttacttgttgaaagtgtgagatagggcatcaaa |
127 |
Q |
| |
|
||||||||||||||||||||||| | | ||| |||| | |||||||||||| || ||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
10878310 |
ccaaatgagtaatttcaacaaaatttatagtgaaacaga----agaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaa |
10878405 |
T |
|
| Q |
128 |
attttgtggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttatgacgggggctctcgtcattccatcacggaggacaact |
227 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |||||||||||||| |
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|
| T |
10878406 |
attttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacgactggggctcgggtcattccgtcacggaggacaacg |
10878505 |
T |
|
| Q |
228 |
gcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgc |
327 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || | |
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|
| T |
10878506 |
gcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcc |
10878605 |
T |
|
| Q |
328 |
cgtcaagcaacaaag |
342 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
10878606 |
cgtcgagcaacaaag |
10878620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 28 - 342
Target Start/End: Original strand, 10883381 - 10883691
Alignment:
| Q |
28 |
ccaaatgagtaatttcaacaaaaataaaagtagaacatataggagaaagttcaaagtttaaaattacttacttgttgaaagtgtgagatagggcatcaaa |
127 |
Q |
| |
|
||||||||||||||||||||||| | | ||| |||| | |||||||||||| || ||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
10883381 |
ccaaatgagtaatttcaacaaaatttatagtgaaacaga----agaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaa |
10883476 |
T |
|
| Q |
128 |
attttgtggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttatgacgggggctctcgtcattccatcacggaggacaact |
227 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |||||||||||||| |
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|
| T |
10883477 |
attttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacgactggggctcgggtcattccgtcacggaggacaacg |
10883576 |
T |
|
| Q |
228 |
gcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgc |
327 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || | |
|
|
| T |
10883577 |
gcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcc |
10883676 |
T |
|
| Q |
328 |
cgtcaagcaacaaag |
342 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
10883677 |
cgtcgagcaacaaag |
10883691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 95 - 342
Target Start/End: Complemental strand, 10046623 - 10046376
Alignment:
| Q |
95 |
ttacttgttgaaagtgtgagatagggcatcaaaattttgtggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttatgacg |
194 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||| |||||||||||||| || || ||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
10046623 |
ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaaaaactttaactgagaagctcttttagcggagttgaatcttacgacg |
10046524 |
T |
|
| Q |
195 |
ggggctctcgtcattccatcacggaggacaactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaacctt |
294 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
10046523 |
ggggctctggtcatgccatcacggaggacaaccgcggaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaacctt |
10046424 |
T |
|
| Q |
295 |
cggtggttgccatcggcaccgtgtactctttgccgtcaagcaacaaag |
342 |
Q |
| |
|
| || |||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
10046423 |
ccgtcgttgccatcggcaccgtgtactctttcccatcaagcaacaaag |
10046376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 71 - 342
Target Start/End: Complemental strand, 10867027 - 10866756
Alignment:
| Q |
71 |
agaaagttcaaagtttaaaattacttacttgttgaaagtgtgagatagggcatcaaaattttgtggatcttctaaaaagaatttcaactgagaagctctt |
170 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10867027 |
agaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgggaagctctt |
10866928 |
T |
|
| Q |
171 |
ttggcggagttgaatcttatgacgggggctctcgtcattccatcacggaggacaactgcggaagcaccaccagaaacataaatagctttacaacctctgt |
270 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |||||||| || ||||| ||||| |||||||| ||||| |||||||||||||||||||| ||||| | |
|
|
| T |
10866927 |
ttggcagagttgaatcttacaacgggggctctggtcattccgtcgcggagcacaaccgcggaagccccaccggaaacataaatagctttacagcctctat |
10866828 |
T |
|
| Q |
271 |
tggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgccgtcaagcaacaaag |
342 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||||||||| |
|
|
| T |
10866827 |
tggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaag |
10866756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 95 - 342
Target Start/End: Original strand, 10887362 - 10887609
Alignment:
| Q |
95 |
ttacttgttgaaagtgtgagatagggcatcaaaattttgtggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttatgacg |
194 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10887362 |
ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacg |
10887461 |
T |
|
| Q |
195 |
ggggctctcgtcattccatcacggaggacaactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaacctt |
294 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
10887462 |
ggggctctggtcattccgtcgcggagcacaacagcggaagcacctccggaaacataaatagctttacagcctctgttggtgcttgcaaccaaacaacctt |
10887561 |
T |
|
| Q |
295 |
cggtggttgccatcggcaccgtgtactctttgccgtcaagcaacaaag |
342 |
Q |
| |
|
|||| |||||||| ||||||||||| || || ||||| |||||||||| |
|
|
| T |
10887562 |
cggttgttgccatgggcaccgtgtattcattcccgtcgagcaacaaag |
10887609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 77 - 342
Target Start/End: Complemental strand, 39676585 - 39676320
Alignment:
| Q |
77 |
ttcaaagtttaaaattacttacttgttgaaagtgtgagatagggcatcaaaattttgtggatcttctaaaaagaatttcaactgagaagctcttttggcg |
176 |
Q |
| |
|
|||||| || |||| ||||||||||||||| || ||||| | || |||||||||| | |||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
39676585 |
ttcaaaattcaaaaatacttacttgttgaatgtatgagagatggaatcaaaatttagaggatcttccaaaaagaatttcaactgagaagctcttttagcg |
39676486 |
T |
|
| Q |
177 |
gagttgaatcttatgacgggggctctcgtcattccatcacggaggacaactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtac |
276 |
Q |
| |
|
||||||||||||| ||| || ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676485 |
gagttgaatcttacgacaggagctctggtcattccatcacgaaggacaactgccgaagcaccaccagaaacataaatagctttacaacctctgttggtac |
39676386 |
T |
|
| Q |
277 |
ttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgccgtcaagcaacaaag |
342 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||| ||||| ||||| || || |||||||||| |
|
|
| T |
39676385 |
ttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaag |
39676320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 37948325 - 37948263
Alignment:
| Q |
233 |
agcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttc |
295 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||| ||||| |
|
|
| T |
37948325 |
agcaccaccagaaacatatatagctttacaccctctattagtactagcaaccaaacacccttc |
37948263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 322
Target Start/End: Original strand, 30709477 - 30709568
Alignment:
| Q |
231 |
gaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactc |
322 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||||| || ||||||||||| | ||| ||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
30709477 |
gaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgtactc |
30709568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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