View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0013-INSERTION-1 (Length: 716)
Name: NF0013-INSERTION-1
Description: NF0013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0013-INSERTION-1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 8 - 716
Target Start/End: Original strand, 14583559 - 14584267
Alignment:
| Q |
8 |
gaggtatcagctattctatcttgtaagtgtatagaagagagaatgatgaataaaataagattgtctggatgagatagaatgatagtaaagagaatgatag |
107 |
Q |
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| T |
14583559 |
gaggtatcagctattctatcttgtaagtgtatagaagagagaatgatgaataaaataagattgtctggatgagatagaatgatagtaaagagaatgatag |
14583658 |
T |
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| Q |
108 |
aatgatagacagaaagtgaaaatgtatttctaactttggtgagtttgtgagagtagatgagacttgagaagagaatgataaataaaataagattgtctga |
207 |
Q |
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| T |
14583659 |
aatgatagacagaaagtgaaaatgtatttctaactttggtgagtttgtgagagtagatgagacttgagaagagaatgataaataaaataagattgtctga |
14583758 |
T |
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| Q |
208 |
atgatagagaatagtaagtaaacataaagataataaaaaggactcacttactctctcacaagtttggttgatcattgagtttttgcaactaatctaatgc |
307 |
Q |
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| T |
14583759 |
atgatagagaatggtaagtaaacattaagataataaaaaggactcactcactctctcacaagtttggttgatcattgagtttttgtaactaatctaatgc |
14583858 |
T |
|
| Q |
308 |
aaagaatcaaatcaagcctttgatcaataaattctacagctatcatggtaattaatattatcatgacaattgtgtctgcaactaggtgaatacataaaat |
407 |
Q |
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| T |
14583859 |
aaagaatcaaatcaagcctttgatcaataaattctacagctatcatggtaattaatattatcatgacaattgtgtctgcaactaggtgaatacataaaat |
14583958 |
T |
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| Q |
408 |
acatataaacttgtcactctaattaatcatctgcacaaactataactcaaagacaaccttatgtggaaaccaaggaatatacatgcgttgaaacttgaac |
507 |
Q |
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| T |
14583959 |
acatataaacttgtcactctaattaatcatctgcacaaactataactcaaagacaaccttttgtggaaaccaaggaatatacatgcgttgaaacttgaac |
14584058 |
T |
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| Q |
508 |
cgaatgtgtataacgaaccagatacatggtatgcggagatattgactagttctgctcaacttttccaattccctttaccagtttttaagagagaagcata |
607 |
Q |
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| T |
14584059 |
cgaatgtgtataacgaaccagatacatggtatgcggagatattgactagttctgctcaacttttccaatgccctttaccaatttttaagagagaagcata |
14584158 |
T |
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| Q |
608 |
gagtaatttgttccaggtatctggtactcctggtaagcaccaatggctacaatcttggtgttgctccgcggtggttcgttctgcttctgtcttgtattcc |
707 |
Q |
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| T |
14584159 |
gagtaattcgttccaggtatctggtactcctggtaagcaccaatggctacaatcttggtgttgctccgcggtggttcgttctgcttctgtcttgtattcc |
14584258 |
T |
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| Q |
708 |
attctgtat |
716 |
Q |
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| T |
14584259 |
attctgtat |
14584267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 663
Target Start/End: Original strand, 29447673 - 29447746
Alignment:
| Q |
590 |
ttttaagagagaagcatagagtaatttgttccaggtatctggtactcctggtaagcaccaatggctacaatctt |
663 |
Q |
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||||||||||||| |||| | |||| ||||| |||||||||||||| || || ||||||||||| ||||||| |
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| T |
29447673 |
ttttaagagagaaacatataacaattcattccaagtatctggtactccaggcaaacaccaatggctgcaatctt |
29447746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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