View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0013-INSERTION-3 (Length: 748)
Name: NF0013-INSERTION-3
Description: NF0013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0013-INSERTION-3 |
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Alignment Details
Target: chr6 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 258 - 745
Target Start/End: Original strand, 12282321 - 12282808
Alignment:
| Q |
258 |
gcaagtatatgtaacatgttatttatgttgtactagatattgaaattagttttggtaattagtattgaaaagagagtataaggttttttatagtctcttt |
357 |
Q |
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| T |
12282321 |
gcaagtatatgtaacatgttatttatgttgtactagatattgaaattagttttggtaattagtattgaaaagagagtataaggttttttatagtctcttt |
12282420 |
T |
|
| Q |
358 |
gtaatttgtatacatggatgctattgttcatctatgttaatagataaagtttgaagtttttcatttgataagtttgaggaaattaatatatagtcttcta |
457 |
Q |
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| T |
12282421 |
gtaatttgtatacatggatgctattgttcatctatgttaatagataaagtttgaagtttttcatttgataagtttgaggaaattaatatatagtcttcta |
12282520 |
T |
|
| Q |
458 |
catatgttttttatttgaaaaagcaaaggaaaatagatatcattgcactagcacaagatgtgccaaaaataacaccaatacaaagtcaccacttgagatt |
557 |
Q |
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| T |
12282521 |
catatgttttttatttgaaaaagcaaaggaaaatagatatcattgcactagcacaagatgtgccaaaaataacaccaatacaaagtcaccacttgagatt |
12282620 |
T |
|
| Q |
558 |
tattgacataaggttatattgaaagcaaaaatctaggccaaacttatgggagtatagttcttctcctttttaacaaaaagcatgtcaccttgaaatttca |
657 |
Q |
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| T |
12282621 |
tattgacataaggttatattgaaagcaaaaatctaggccaaacttatgggagtaaagttcttctcctttttaacaaaaagcatgtgaccttgaaatttca |
12282720 |
T |
|
| Q |
658 |
catgtatagcattttgtatgtgaaatggcacaagcaaatcacacaaaaagatccacaaaatagggaattttcactagtggatcctaac |
745 |
Q |
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| T |
12282721 |
catgtatagcattttgtatgtgaaatggcacaagctaatcacacaaaaagatccacaaaatagggaattttcactagtggatcctaac |
12282808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 12282072 - 12282289
Alignment:
| Q |
8 |
aagtggactttagttttatataactaactacttttatccgataattttttaaaaatcgcaaccatccgtaaatacagagaatttacctaatgatctctca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||| |
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| T |
12282072 |
aagtggactttagttttatataactaactacttttatccgataattttttaaaaatcgcacccatccataagtacagagaatttacctaatgatctctca |
12282171 |
T |
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| Q |
108 |
aaaacgacactctgtccagaacaacacttcccgaagatttacttttcaagaagacaagatggtgnnnnnnnncttcgtatttatccatccgaaatatatg |
207 |
Q |
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| T |
12282172 |
aaaacgacactctgtccagaacaacactttccgaggatttacttttcaagaagacaagatggtgttttttttcttcgtatttatccatccgaaatatatg |
12282271 |
T |
|
| Q |
208 |
tcgggtggataaagaagc |
225 |
Q |
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| T |
12282272 |
tcgggtggataaagaagc |
12282289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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