View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0013-INSERTION-5 (Length: 784)
Name: NF0013-INSERTION-5
Description: NF0013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0013-INSERTION-5 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 181 - 784
Target Start/End: Complemental strand, 7503430 - 7502827
Alignment:
| Q |
181 |
gggagccgaatagtcccgataccctaacctcaccaaacaaacatcactcccgcttcacgtttgtacttctctctgccgatttcgtcctcctgcttcacgt |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7503430 |
gggagccgaatagtcccgataccctaacctcaccaaacaaacaccactcccgcttcacgtttgtacttctctctgctgatttcgtcctcctgcttcacgt |
7503331 |
T |
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| Q |
281 |
ttgtacttctccttcaggttttcttcttaactgattcaaaaaaccctaaaatgtgaaaatcttaacctgttattattgttggaaaaatagaacatgatta |
380 |
Q |
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| T |
7503330 |
ttgtacttctccttcaggttttcttcttaactgattcaaaaaaccctaaaatgtgaaaatcttaacctgttattgttgttggaaaaatagaacatgatta |
7503231 |
T |
|
| Q |
381 |
ctcgtttaaaccctaactgcacttatttatggattcattattggtttttgtaaaaatgaaaatcttgatcatttctgcaatcatgatcacttctatgaat |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7503230 |
ctcgtttaaaccctaactgcacttatttatggattcattattggtttttgtaaaaatgaaaatcttgatcatttctgcaatcatgatcacttctatgaat |
7503131 |
T |
|
| Q |
481 |
gatgaatttgtgctatgtaatattgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttat |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7503130 |
gatgaatttgtgctatgtaatattgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttat |
7503031 |
T |
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| Q |
581 |
gtaaaaatattgatcatttatttctgcaatcatatgatcacttctatgaatgatgaatctgtgtgtgtgtttgaagctcatctattga-nnnnnnnnnnn |
679 |
Q |
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| T |
7503030 |
gtaaaaatattgatcatttatttctgcaatcatatgatcacttctatgaatgatgaatctgtgtgtgtgtttgaagctcgtctattgatttttttttttt |
7502931 |
T |
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| Q |
680 |
actctttgttactgattgcatgcttggatatcactggttttggaatgatgtctannnnnnnnagtcttgatcattcagtaatgtttccttatctgtaatt |
779 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
7502930 |
actctttgttactgattgcatgcttggatatcactgtttttggaatgatgtctattttttttagtcttgatcattcagtaatgttt-cttatctgtaatt |
7502832 |
T |
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| Q |
780 |
taatt |
784 |
Q |
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||||| |
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| T |
7502831 |
taatt |
7502827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 504 - 732
Target Start/End: Original strand, 8139170 - 8139389
Alignment:
| Q |
504 |
tgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttatgtaaaaatattgatcatttattt |
603 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| | | |||||||| ||||||| |||||||||||||| |
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| T |
8139170 |
tgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatct---ttctcatttatttaaaaatcttgatcatttattt |
8139266 |
T |
|
| Q |
604 |
ctgcaatcatatgatcacttctatgaatgatgaatctgtgtgtgtgtttgaagctcatctattgannnnnnnnnnnactctttgttactgattgcatgct |
703 |
Q |
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|||||||| ||||||| |||||||||||||||||| ||||| |||||||| ||||| |||| | ||||||||||||| |||||||| |
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| T |
8139267 |
ctgcaatc--atgatcatttctatgaatgatgaatc----tgtgtttttgaagcgcatctgttgatttttttttttagtctttgttactgaatgcatgct |
8139360 |
T |
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| Q |
704 |
tggatatcactggttttggaatgatgtct |
732 |
Q |
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| T |
8139361 |
tgaatatcactgtttttggaatgatgtct |
8139389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 569 - 730
Target Start/End: Complemental strand, 7499692 - 7499537
Alignment:
| Q |
569 |
ttaatcatttatgtaaaaatattgatcatttatttctgcaatcatatgatcacttctatgaatgatgaatctgtgtgtgtgtttgaagctcatctattga |
668 |
Q |
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|||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
7499692 |
ttaatcatttatctaaaaatctttatcatttatttctgcaatc--atgatcacttctatgaatgatgaatctgtgt-----tttgaagctcatctgttga |
7499600 |
T |
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| Q |
669 |
-nnnnnnnnnnnactctttgttactgattgcatgcttggatatcactggttttggaatgatgt |
730 |
Q |
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| ||||||||||||| |||||||||| | ||||||| |||||||||||||| |
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| T |
7499599 |
tttttttttttgagtctttgttactgaatgcatgcttgaacatcactgtttttggaatgatgt |
7499537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 451 - 492
Target Start/End: Complemental strand, 7499661 - 7499620
Alignment:
| Q |
451 |
atttctgcaatcatgatcacttctatgaatgatgaatttgtg |
492 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7499661 |
atttctgcaatcatgatcacttctatgaatgatgaatctgtg |
7499620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 504 - 564
Target Start/End: Complemental strand, 7499733 - 7499673
Alignment:
| Q |
504 |
tgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaat |
564 |
Q |
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|||| ||||||||||||||||| |||||| ||||||||||| | ||||||||| ||||||| |
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| T |
7499733 |
tgtctcagttttttatgtttctagatcatgaagtaaaaatcttaatcatttatctaaaaat |
7499673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 451 - 492
Target Start/End: Original strand, 8139263 - 8139304
Alignment:
| Q |
451 |
atttctgcaatcatgatcacttctatgaatgatgaatttgtg |
492 |
Q |
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| T |
8139263 |
atttctgcaatcatgatcatttctatgaatgatgaatctgtg |
8139304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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