View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0013-INSERTION-6 (Length: 743)
Name: NF0013-INSERTION-6
Description: NF0013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0013-INSERTION-6 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 37473037 - 37473272
Alignment:
| Q |
11 |
ctgaggttcactaaggcaaataatggaggaatgatgttggcgcaaaaggaagctttgaaggattaggtgccgtgttgtcaacaaaacatgtataagttct |
110 |
Q |
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| T |
37473037 |
ctgaggttcactaaggcaaataatggaggaatgatgttggcgcaaaaggaagctttgaaggattaggtgccgtgttgtcaacaaaacatgtataagttct |
37473136 |
T |
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| Q |
111 |
aatttgttgtttttaactatccaaacaacgttaactcttagtgtatccgaacatcattcgagattcgaagttttt----aaaatgttgtaacaaacaaac |
206 |
Q |
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| T |
37473137 |
aatttgttgtttt----tatccaaacaacattaactcttagtgtatccgaacatcattcaagattccaagtttttaaaaaaaatgttgtaacaaacaaac |
37473232 |
T |
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| Q |
207 |
taaaactttcaagagtgtgtaccaaaaactatcaagagtg |
246 |
Q |
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| T |
37473233 |
taaaactttcaagagtgtgtaccaaaaactatcaagagtg |
37473272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 231 - 412
Target Start/End: Original strand, 37473234 - 37473415
Alignment:
| Q |
231 |
aaaactatcaagagtgtgtaccaaaaactatcaagagtgaatattttgtttnnnnnnnttgattctattagaaaagaagttgtgataaacaggctctaag |
330 |
Q |
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| T |
37473234 |
aaaactttcaagagtgtgtaccaaaaactatcaagagtgaatattttgtttaaaaaaagtgattctattagaaaagaagttgtgataaacagcctctaag |
37473333 |
T |
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| Q |
331 |
tgtgaaaaggtagaggtaatttgtaatnnnnnnntcaannnnnnnnagatgtattcaaacaagttaaaaactattttcttga |
412 |
Q |
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| T |
37473334 |
tgtgaaaaggtagaggtaatttgtaataaaaaagtcaattttttttagatgtattcaaacaagttaaaaactattttcttga |
37473415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 642 - 743
Target Start/End: Original strand, 37473500 - 37473601
Alignment:
| Q |
642 |
aaatatgtaacaaactactcctaaagtacgtgatttcattttgtgcgttgtttggttgggttatactgcaagatcaacttcatacaaagatttaagcggc |
741 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||| || |||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
37473500 |
aaatatgtaacaaactagtcctaaagtaggtgatttcattttttgtgttgtttgtttggtttatactgaaagatcaacttcatacaaagatttaagcggc |
37473599 |
T |
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| Q |
742 |
aa |
743 |
Q |
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|| |
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| T |
37473600 |
aa |
37473601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 487 - 522
Target Start/End: Original strand, 37473380 - 37473415
Alignment:
| Q |
487 |
agatgtattcaaacaagttaaaaactattttcttga |
522 |
Q |
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| T |
37473380 |
agatgtattcaaacaagttaaaaactattttcttga |
37473415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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