View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0013-INSERTION-7 (Length: 603)

Name: NF0013-INSERTION-7
Description: NF0013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0013-INSERTION-7
NF0013-INSERTION-7
[»] chr7 (6 HSPs)
chr7 (256-595)||(1523152-1523485)
chr7 (38-195)||(1523543-1523700)
chr7 (259-527)||(8492852-8493117)
chr7 (259-527)||(8519425-8519690)
chr7 (39-195)||(8492634-8492790)
chr7 (54-195)||(8519222-8519363)
[»] chr5 (5 HSPs)
chr5 (257-516)||(15172985-15173241)
chr5 (45-194)||(15173302-15173451)
chr5 (60-164)||(15168578-15168682)
chr5 (368-425)||(15168337-15168394)
chr5 (451-513)||(15168259-15168321)
[»] chr4 (5 HSPs)
chr4 (57-194)||(55809173-55809310)
chr4 (353-419)||(31461884-31461950)
chr4 (57-194)||(55805854-55805991)
chr4 (338-381)||(55806099-55806142)
chr4 (257-310)||(55809372-55809425)
[»] chr8 (2 HSPs)
chr8 (57-194)||(29709659-29709796)
chr8 (257-310)||(29709544-29709597)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 256 - 595
Target Start/End: Complemental strand, 1523485 - 1523152
Alignment:
Q  256 tagaatttgatctaaagggagcaaacgtcttgttatagttttccttcccatggatgactttatgacaattatctatttatgtgataaccataatatgaga 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1523485 tagaatttgatctaaagggagcaaacgtcttgttatagttttccttctcatggatgactttatgacaattatctatttatgtgataaccataatatgaga 1523386  T
Q  356 atggataaaggagaaaattataccttgttcttaccacagcaatacaaaattagcttttcatacgtagagggatgaaggtgaaatattcattaaatcatgc 455  Q
    ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  1523385 atgaataaaggagaaaattataccttgttcttaccacaacaatacaaaattagcttttcatacgtaga-ggatgaaggtgaaatattcattagatcatgc 1523287  T
Q  456 aaattctcaatctcttttatgagatgctcaatcttgaaattacccacaaacgatataagaaaaatttctaagnnnnnnnnttgtaacataaattgcatac 555  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||        |||||  ||||| |||||||    
T  1523286 aaattctcaatctcttttatgagatgctcaaccttgaaattaccaacaaacgatataag-aaaatttctaagaaaaaaaattgta--ataaa-tgcatac 1523191  T
Q  556 actgccaaacggtgttttatgatgggatatgctcaatttt 595  Q
    ||||| ||||  ||||||||||||||||||||||||||||    
T  1523190 actgcaaaac-atgttttatgatgggatatgctcaatttt 1523152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 38 - 195
Target Start/End: Complemental strand, 1523700 - 1523543
Alignment:
Q  38 cagggaagctgcttttcgtaagatatatagtacctgaaaatcttgattagtttctgagcaagtctctaatacagattgcattacatgactggagggcata 137  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1523700 cagggaagctgcttttcgtaagatatatagtacctgaaaatctagattagtttctgagcaagtctctaatacagattgcattacatgactggagggcata 1523601  T
Q  138 cagaatgcttcacacattttatcaacaacataaatagctgcatccacctgaataagtt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1523600 cagaatgcttcacacattttatcaacaacataaatagctgcatccacctgaataagtt 1523543  T

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Target: chr7; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 259 - 527
Target Start/End: Original strand, 8492852 - 8493117
Alignment:
Q  259 aatttgatctaaagggagcaaacgtcttgttatagttttccttcccat---ggatgactttatgacaattatctatttatgtgataaccataatatgaga 355  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||   ||||||||||||||||||||  || ||    ||||||||||||||||||    
T  8492852 aatttgatctaaagggagcaaacgtcttgttatcgttttccttctcatcatggatgactttatgacaattacttaatt----gataaccataatatgaga 8492947  T
Q  356 atggataaaggagaaaattataccttgttcttaccacagcaatacaaaattagcttttcatacgtagagggatgaaggtgaaatattcattaaatcatgc 455  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | ||| ||||||||| ||||  ||| | |||    
T  8492948 atgaataaaggagaaaattataccttgttcttaccacagcaatacaaaattagcttttcatacaaaga-gaatgtaggtgaaattttcaacaaaccgtgc 8493046  T
Q  456 aaattctcaatctcttttatgagatgctcaatcttgaaattacccacaaacgatataagaaaaatttctaag 527  Q
    |||||||||||||||||||||| |||||||| |||||||||||| | ||| |||||||| ||||||||||||    
T  8493047 aaattctcaatctcttttatgatatgctcaaccttgaaattaccaaaaaatgatataag-aaaatttctaag 8493117  T

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Target: chr7; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 259 - 527
Target Start/End: Original strand, 8519425 - 8519690
Alignment:
Q  259 aatttgatctaaagggagcaaacgtcttgttatagttttccttcccat---ggatgactttatgacaattatctatttatgtgataaccataatatgaga 355  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||   ||||||||||||||||||||  || ||    ||||||||||||||||||    
T  8519425 aatttgatctaaagggagcaaacgtcttgttatcgttttccttctcatcatggatgactttatgacaattacttaatt----gataaccataatatgaga 8519520  T
Q  356 atggataaaggagaaaattataccttgttcttaccacagcaatacaaaattagcttttcatacgtagagggatgaaggtgaaatattcattaaatcatgc 455  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | ||| ||||||||| ||||  | | | |||    
T  8519521 atgaataaaggagaaaattataccttgttcttaccacagcaatacaaaattagcttttcatacaaaga-gaatgtaggtgaaattttcaacagaccgtgc 8519619  T
Q  456 aaattctcaatctcttttatgagatgctcaatcttgaaattacccacaaacgatataagaaaaatttctaag 527  Q
    |||||||||||||||||||||| |||||||| |||||||||||| | ||| |||||||| ||||||||||||    
T  8519620 aaattctcaatctcttttatgatatgctcaaccttgaaattaccaaaaaatgatataag-aaaatttctaag 8519690  T

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Target: chr7; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 8492634 - 8492790
Alignment:
Q  39 agggaagctgcttttcgtaagatatatagtacctgaaaatcttgattagtttctgagcaagtctctaatacagattgcattacatgactggagggcatac 138  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8492634 agggaagctgctctacgtaagatatatagtacctgaaaattttgattagtttctgagcaagtctctaatacagattgcattacatgactggagggcataa 8492733  T
Q  139 agaatgcttcacacattttatcaacaacataaatagctgcatccacctgaataagtt 195  Q
    || |||||||||||||||||||||||| || ||||||| |||||||||| |||||||    
T  8492734 agtatgcttcacacattttatcaacaatattaatagctacatccacctgcataagtt 8492790  T

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Target: chr7; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 8519222 - 8519363
Alignment:
Q  54 cgtaagatatatagtacctgaaaatcttgattagtttctgagcaagtctctaatacagattgcattacatgactggagggcatacagaatgcttcacaca 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  8519222 cgtaagatatatagtacctgaaaatcttgattagtttctgagcaagtctctaatacagattgcattacatgactggagggcataaagtatgcttcacaca 8519321  T
Q  154 ttttatcaacaacataaatagctgcatccacctgaataagtt 195  Q
    ||||||||| || || ||||||| |||||||||| |||||||    
T  8519322 ttttatcaataatattaatagctacatccacctgcataagtt 8519363  T

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Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 257 - 516
Target Start/End: Complemental strand, 15173241 - 15172985
Alignment:
Q  257 agaatttgatctaaagggagcaaacgtcttgttatagttttccttcccatggatgactttatgacaattatctatttatgtgataaccataatatgagaa 356  Q
    |||||||||| |  ||||||||| | ||||||||| |||||||||| |||||||| |||||||||||||||  ||| || |||||||| || ||||||||    
T  15173241 agaatttgatatggagggagcaaccatcttgttatcgttttccttctcatggatgtctttatgacaattat--attgatttgataaccgtattatgagaa 15173144  T
Q  357 tggataaaggagaaaattataccttgttcttaccacagcaatacaaaattagcttttcatacgtagagggatgaaggtgaaatattcattaaatcatgca 456  Q
    || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| ||| | |||  |||| | ||  | | ||||||    
T  15173143 tgaataaaggagaaaattataccttgtccttgccacagcaatacaaaattagcttttcatacataga-ggacgcaggcaaaatttccaacacaccatgca 15173045  T
Q  457 aattctcaatctcttttatgagatgctcaatcttgaaattacccacaaacgatataagaa 516  Q
    |||||||||||| |||||||| |||||||| |||||||||||| |||||| |||||||||    
T  15173044 aattctcaatcttttttatgatatgctcaaccttgaaattaccaacaaaccatataagaa 15172985  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 45 - 194
Target Start/End: Complemental strand, 15173451 - 15173302
Alignment:
Q  45 gctgcttttcgtaagatatatagtacctgaaaatcttgattagtttctgagcaagtctctaatacagattgcattacatgactggagggcatacagaatg 144  Q
    |||||||| ||||||| |||||||||| |||| | ||||| |||||| ||||||||||||||||||||||||||||||||||| ||| || || ||  ||    
T  15173451 gctgctttacgtaagacatatagtacccgaaattgttgatcagtttccgagcaagtctctaatacagattgcattacatgactagagagcgtaaagcctg 15173352  T
Q  145 cttcacacattttatcaacaacataaatagctgcatccacctgaataagt 194  Q
    |||||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  15173351 cttcacacattttatcaacaacatcaatagctacatccacctgcataagt 15173302  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 15168682 - 15168578
Alignment:
Q  60 atatatagtacctgaaaatcttgattagtttctgagcaagtctctaatacagattgcattacatgactggagggcatacagaatgcttcacacattttat 159  Q
    |||||||||||| |||||| ||||||||||||  |||||||||||| || |||||||||||||||| | ||| || || ||  |||||||||||||||||    
T  15168682 atatatagtacccgaaaatgttgattagtttccaagcaagtctctagtagagattgcattacatgagtagagagcgtaaagcctgcttcacacattttat 15168583  T
Q  160 caaca 164  Q
    |||||    
T  15168582 caaca 15168578  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 368 - 425
Target Start/End: Complemental strand, 15168394 - 15168337
Alignment:
Q  368 gaaaattataccttgttcttaccacagcaatacaaaattagcttttcatacgtagagg 425  Q
    |||||||||||||||| |||  |||| |||||||||||||||||||||||| ||||||    
T  15168394 gaaaattataccttgtccttggcacaacaatacaaaattagcttttcatacatagagg 15168337  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 15168321 - 15168259
Alignment:
Q  451 catgcaaattctcaatctcttttatgagatgctcaatcttgaaattacccacaaacgatataa 513  Q
    ||||||||||||| |||| || ||||| |||||||| |||||||||| | |||||| ||||||    
T  15168321 catgcaaattctcgatcttttctatgatatgctcaaccttgaaattatcaacaaaccatataa 15168259  T

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Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 55809173 - 55809310
Alignment:
Q  57 aagatatatagtacctgaaaatcttgattagtttctgagcaagtctctaatacagattgcattacatgactggagggcatacagaatgcttcacacattt 156  Q
    ||||||||||||||| |||||| ||||| |||||  || ||||||||||||| |||||||||| ||||||| ||| || || ||  ||||||| ||||||    
T  55809173 aagatatatagtacccgaaaatgttgatcagttttcgaacaagtctctaataaagattgcattgcatgactagagagcgtaaagcctgcttcagacattt 55809272  T
Q  157 tatcaacaacataaatagctgcatccacctgaataagt 194  Q
     |||||||| || ||||||| |||||||||| ||||||    
T  55809273 catcaacaaaatcaatagctacatccacctgcataagt 55809310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 353 - 419
Target Start/End: Complemental strand, 31461950 - 31461884
Alignment:
Q  353 agaatggataaaggagaaaattataccttgttcttaccacagcaatacaaaattagcttttcatacg 419  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |||||||||||||    
T  31461950 agaatggataaaggagaaaattataccttgtgcataccacagcaatacagaatgagcttttcatacg 31461884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 55805854 - 55805991
Alignment:
Q  57 aagatatatagtacctgaaaatcttgattagtttctgagcaagtctctaatacagattgcattacatgactggagggcatacagaatgcttcacacattt 156  Q
    ||||||||||||||| |||||| ||||| |||||| || ||||||||||||| |||||||||| ||||||| ||| || ||  |  ||||||| |||||     
T  55805854 aagatatatagtacccgaaaatgttgatcagtttccgaacaagtctctaataaagattgcattgcatgactagagagcgtaaggcctgcttcagacatta 55805953  T
Q  157 tatcaacaacataaatagctgcatccacctgaataagt 194  Q
     |||||| | || ||||||| |||||||||| ||||||    
T  55805954 catcaaccaaatcaatagctacatccacctgcataagt 55805991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 55806099 - 55806142
Alignment:
Q  338 gataaccataatatgagaatggataaaggagaaaattatacctt 381  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||    
T  55806099 gataaccgtaatatgagaatgaataaaggacaaaattatacctt 55806142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 55809372 - 55809425
Alignment:
Q  257 agaatttgatctaaagggagcaaacgtcttgttatagttttccttcccatggat 310  Q
    |||||| ||| | ||||||||||||||| |||||| |||||||||| |||||||    
T  55809372 agaattcgatatgaagggagcaaacgtcctgttatcgttttccttctcatggat 55809425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 194
Target Start/End: Complemental strand, 29709796 - 29709659
Alignment:
Q  57 aagatatatagtacctgaaaatcttgattagtttctgagcaagtctctaatacagattgcattacatgactggagggcatacagaatgcttcacacattt 156  Q
    ||||||||||||||| |||||| ||||| |||||| || ||||||||||||| |||||||||| ||||||| ||| || ||  |  ||||||| |||||     
T  29709796 aagatatatagtacccgaaaatgttgatcagtttccgaacaagtctctaataaagattgcattgcatgactagagagcgtaaggcctgcttcagacatta 29709697  T
Q  157 tatcaacaacataaatagctgcatccacctgaataagt 194  Q
     |||||| | || ||||||| |||||||||| ||||||    
T  29709696 catcaaccaaatcaatagctacatccacctgcataagt 29709659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 29709597 - 29709544
Alignment:
Q  257 agaatttgatctaaagggagcaaacgtcttgttatagttttccttcccatggat 310  Q
    |||||| ||| | ||||||||||||||| |||||| |||||||||| |||||||    
T  29709597 agaattcgatatgaagggagcaaacgtcctgttatcgttttccttctcatggat 29709544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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