View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0013-INSERTION-8 (Length: 681)
Name: NF0013-INSERTION-8
Description: NF0013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0013-INSERTION-8
Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 644
Target Start/End: Complemental strand, 53274578 - 53273953
Alignment:
Q
8
caccgctcttagattgtccatgtgaaaatgtattaatgtaatacgaatcataactttagaatgatcgcaattgcggtcgcaaccatttgatttaagatgt
107
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
T
53274578
caccgctcttagattgtccatgtgaaaatgtattaatgtaatacgaatcataattttagaatgatcgcaattgcggtcgcaaccattt-----aagatgt
53274484
T
Q
108
ctatgtgttgaagatgtaaaagaacctggttatacacgaaggaatatattcgtaattaagaaatatggctagtatatgctatctcatgaagataatataa
207
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
T
53274483
ctatgtgttgaagatgtaaaagaacctggttatacacgaaggaatatattcgtaattaagacatatggctagtatatgctatct---gaagataatataa
53274387
T
Q
208
tatgtacctatatagtctgatggaacttttccattgcaaaaccgaccagtagggatgcctccattgaaatctttaccatatggaagaaaattgcacctag
307
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
53274386
tatgtacctatatagtctgatggaacttttccattgcaaaaccgaccagtagggatgcctccattgaaatctttaccatatggaagaaaattgcacctag
53274287
T
Q
308
catatgttttcatgttattattgttgttgcccgtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaagctctagtgt
407
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
T
53274286
catatgttttcatgttattattgttgttgcccgtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaagctctattgt
53274187
T
Q
408
tgccaaactagccttagttgtgtaagaaacaactcccaataatatgaagaaacaaatcatcaaggtacacattgaagaataagtttagcta---cttgca
504
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||
T
53274186
tgccaaactagccttagttgtgtaagaaacaactcccaataatatgaagaaataaatcattaaggtacacattgaagaataagtctagctacttcttgca
53274087
T
Q
505
aatgctcactctttcttccctcccttttcttttcagcttaattttttcactcatttattgcttgcaagaaatgccttcatctaaacttctgactgcacg-
603
Q
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
T
53274086
aatgctcactctttcttccctcc-----cttttcagctgaattttttcactcatttattgcttgcaagaaatgccttcatct-aacttctgactgcacga
53273993
T
Q
604
actatttttgtctgttttttcatagtagtatttaattctaa
644
Q
|||| ||||||||||||||||||||||||||||||||||||
T
53273992
acta-ttttgtctgttttttcatagtagtatttaattctaa
53273953
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 398
Target Start/End: Complemental strand, 8231188 - 8231001
Alignment:
Q
211
gtacctatatagtctgatggaacttttccattgcaaaaccgaccagtagggatgcctccattgaaatctttaccatatggaagaaaattgcacctagcat
310
Q
|||||||| ||||||| |||||||||||||||| ||| | || || || || ||||| || |||||||| ||||| || |||||||||| | |||
T
8231188
gtacctatgaagtctgagggaacttttccattgctaaatcttccggttggaattcctcctttaaaatctttcccataaggtggaaaattgcaacgagctg
8231089
T
Q
311
atgttttcatgttattattgttgttgcccgtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaag
398
Q
|||| ||| || || || ||||| || ||||||| ||| |||||||||||||| || |||||||||| ||||||||||||||||||
T
8231088
ttgttctcaaattgttgttattgttacctgtatccacgatagaatctccaaacaccaacactgctggaactgaaacatttggtggaag
8231001
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 8252637 - 8252582
Alignment:
Q
340
gtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtgg
395
Q
||||||||||||||||||||||| ||||| ||||||||||| ||| ||||||||||
T
8252637
gtatccatgattgaatctccaaatacaaacactgctggaaacgaagcatttggtgg
8252582
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 8270210 - 8270152
Alignment:
Q
340
gtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaag
398
Q
|||||| | |||||||||||||||||||| |||||||||| ||||||||||||| ||||
T
8270210
gtatccgtaattgaatctccaaacacaaacactgctggaattgaaacatttggttgaag
8270152
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 8242661 - 8242622
Alignment:
Q
340
gtatccatgattgaatctccaaacacaaatactgctggaa
379
Q
||||||||||||||||||||||||||||| ||||||||||
T
8242661
gtatccatgattgaatctccaaacacaaacactgctggaa
8242622
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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