View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0013-INSERTION-8 (Length: 681)
Name: NF0013-INSERTION-8
Description: NF0013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0013-INSERTION-8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 644
Target Start/End: Complemental strand, 53274578 - 53273953
Alignment:
| Q |
8 |
caccgctcttagattgtccatgtgaaaatgtattaatgtaatacgaatcataactttagaatgatcgcaattgcggtcgcaaccatttgatttaagatgt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53274578 |
caccgctcttagattgtccatgtgaaaatgtattaatgtaatacgaatcataattttagaatgatcgcaattgcggtcgcaaccattt-----aagatgt |
53274484 |
T |
|
| Q |
108 |
ctatgtgttgaagatgtaaaagaacctggttatacacgaaggaatatattcgtaattaagaaatatggctagtatatgctatctcatgaagataatataa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53274483 |
ctatgtgttgaagatgtaaaagaacctggttatacacgaaggaatatattcgtaattaagacatatggctagtatatgctatct---gaagataatataa |
53274387 |
T |
|
| Q |
208 |
tatgtacctatatagtctgatggaacttttccattgcaaaaccgaccagtagggatgcctccattgaaatctttaccatatggaagaaaattgcacctag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53274386 |
tatgtacctatatagtctgatggaacttttccattgcaaaaccgaccagtagggatgcctccattgaaatctttaccatatggaagaaaattgcacctag |
53274287 |
T |
|
| Q |
308 |
catatgttttcatgttattattgttgttgcccgtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaagctctagtgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53274286 |
catatgttttcatgttattattgttgttgcccgtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaagctctattgt |
53274187 |
T |
|
| Q |
408 |
tgccaaactagccttagttgtgtaagaaacaactcccaataatatgaagaaacaaatcatcaaggtacacattgaagaataagtttagcta---cttgca |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
53274186 |
tgccaaactagccttagttgtgtaagaaacaactcccaataatatgaagaaataaatcattaaggtacacattgaagaataagtctagctacttcttgca |
53274087 |
T |
|
| Q |
505 |
aatgctcactctttcttccctcccttttcttttcagcttaattttttcactcatttattgcttgcaagaaatgccttcatctaaacttctgactgcacg- |
603 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53274086 |
aatgctcactctttcttccctcc-----cttttcagctgaattttttcactcatttattgcttgcaagaaatgccttcatct-aacttctgactgcacga |
53273993 |
T |
|
| Q |
604 |
actatttttgtctgttttttcatagtagtatttaattctaa |
644 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53273992 |
acta-ttttgtctgttttttcatagtagtatttaattctaa |
53273953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 398
Target Start/End: Complemental strand, 8231188 - 8231001
Alignment:
| Q |
211 |
gtacctatatagtctgatggaacttttccattgcaaaaccgaccagtagggatgcctccattgaaatctttaccatatggaagaaaattgcacctagcat |
310 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| ||| | || || || || ||||| || |||||||| ||||| || |||||||||| | ||| |
|
|
| T |
8231188 |
gtacctatgaagtctgagggaacttttccattgctaaatcttccggttggaattcctcctttaaaatctttcccataaggtggaaaattgcaacgagctg |
8231089 |
T |
|
| Q |
311 |
atgttttcatgttattattgttgttgcccgtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaag |
398 |
Q |
| |
|
|||| ||| || || || ||||| || ||||||| ||| |||||||||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
8231088 |
ttgttctcaaattgttgttattgttacctgtatccacgatagaatctccaaacaccaacactgctggaactgaaacatttggtggaag |
8231001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 8252637 - 8252582
Alignment:
| Q |
340 |
gtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtgg |
395 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||||| |
|
|
| T |
8252637 |
gtatccatgattgaatctccaaatacaaacactgctggaaacgaagcatttggtgg |
8252582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 8270210 - 8270152
Alignment:
| Q |
340 |
gtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaag |
398 |
Q |
| |
|
|||||| | |||||||||||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
8270210 |
gtatccgtaattgaatctccaaacacaaacactgctggaattgaaacatttggttgaag |
8270152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 8242661 - 8242622
Alignment:
| Q |
340 |
gtatccatgattgaatctccaaacacaaatactgctggaa |
379 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8242661 |
gtatccatgattgaatctccaaacacaaacactgctggaa |
8242622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University