View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0013-INSERTION-9 (Length: 580)

Name: NF0013-INSERTION-9
Description: NF0013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0013-INSERTION-9
NF0013-INSERTION-9
[»] chr4 (30 HSPs)
chr4 (419-547)||(38029398-38029526)
chr4 (248-330)||(38029228-38029312)
chr4 (263-310)||(36444422-36444469)
chr4 (263-310)||(44272837-44272884)
chr4 (263-304)||(44626602-44626643)
chr4 (265-310)||(47014938-47014983)
chr4 (266-317)||(18880785-18880836)
chr4 (258-297)||(31833247-31833286)
chr4 (267-297)||(32464644-32464674)
chr4 (264-310)||(42853937-42853983)
chr4 (265-310)||(11012140-11012185)
chr4 (265-310)||(24088591-24088636)
chr4 (263-292)||(33820381-33820410)
chr4 (259-296)||(35661638-35661675)
chr4 (264-297)||(36058403-36058436)
chr4 (255-292)||(36871202-36871239)
chr4 (263-292)||(42815401-42815430)
chr4 (256-297)||(52487309-52487350)
chr4 (264-292)||(940304-940332)
chr4 (264-292)||(6290460-6290488)
chr4 (264-292)||(12241056-12241084)
chr4 (264-292)||(29577481-29577509)
chr4 (264-292)||(31413820-31413848)
chr4 (264-292)||(33093149-33093177)
chr4 (264-304)||(39449171-39449211)
chr4 (264-292)||(50890118-50890146)
chr4 (269-305)||(52430880-52430916)
chr4 (264-292)||(53662473-53662501)
chr4 (264-312)||(54800996-54801044)
chr4 (264-292)||(54803373-54803401)
[»] chr5 (14 HSPs)
chr5 (263-310)||(7144574-7144621)
chr5 (265-317)||(582887-582939)
chr5 (263-310)||(29803222-29803269)
chr5 (263-304)||(19844342-19844383)
chr5 (263-312)||(35098757-35098806)
chr5 (265-304)||(3154676-3154715)
chr5 (263-310)||(34428157-34428204)
chr5 (263-297)||(35165676-35165710)
chr5 (260-310)||(41179391-41179441)
chr5 (263-292)||(5996664-5996693)
chr5 (263-292)||(38919860-38919889)
chr5 (263-303)||(12878753-12878793)
chr5 (269-317)||(17489351-17489399)
chr5 (256-292)||(30294829-30294865)
[»] chr3 (19 HSPs)
chr3 (265-312)||(36799397-36799444)
chr3 (263-312)||(7867736-7867785)
chr3 (262-312)||(27198185-27198235)
chr3 (262-310)||(45528969-45529017)
chr3 (266-297)||(21239118-21239149)
chr3 (266-304)||(1295332-1295370)
chr3 (272-310)||(35987254-35987292)
chr3 (266-296)||(37134647-37134677)
chr3 (263-292)||(884531-884560)
chr3 (264-297)||(20549425-20549458)
chr3 (263-292)||(40159883-40159912)
chr3 (263-304)||(43499594-43499635)
chr3 (255-292)||(45186597-45186634)
chr3 (263-292)||(50559257-50559286)
chr3 (269-317)||(16139315-16139363)
chr3 (255-291)||(31007369-31007405)
chr3 (265-293)||(34145582-34145610)
chr3 (263-303)||(46952946-46952986)
chr3 (264-292)||(53021187-53021215)
[»] chr8 (18 HSPs)
chr8 (266-312)||(29913564-29913610)
chr8 (266-304)||(14531621-14531659)
chr8 (257-292)||(38939223-38939258)
chr8 (264-310)||(36497659-36497705)
chr8 (264-317)||(2768145-2768198)
chr8 (263-304)||(23952491-23952532)
chr8 (263-304)||(33605111-33605152)
chr8 (266-303)||(34037520-34037557)
chr8 (261-290)||(34799744-34799773)
chr8 (263-296)||(40380278-40380311)
chr8 (263-296)||(42689838-42689871)
chr8 (265-297)||(4312547-4312579)
chr8 (266-310)||(9985705-9985749)
chr8 (264-304)||(12655920-12655960)
chr8 (264-292)||(14233678-14233706)
chr8 (266-310)||(20852919-20852963)
chr8 (264-304)||(39021476-39021516)
chr8 (264-304)||(42012623-42012663)
[»] chr7 (21 HSPs)
chr7 (265-317)||(22692083-22692135)
chr7 (258-292)||(23389638-23389672)
chr7 (264-304)||(5068656-5068696)
chr7 (262-317)||(16567312-16567367)
chr7 (262-317)||(16598295-16598350)
chr7 (257-296)||(34992365-34992404)
chr7 (263-310)||(37392040-37392087)
chr7 (267-297)||(10014995-10015025)
chr7 (266-296)||(26153646-26153676)
chr7 (263-296)||(2323301-2323334)
chr7 (264-297)||(7990077-7990110)
chr7 (263-292)||(27704432-27704461)
chr7 (265-310)||(40693555-40693600)
chr7 (264-317)||(47530311-47530364)
chr7 (264-304)||(2849554-2849594)
chr7 (264-304)||(10945020-10945060)
chr7 (264-292)||(15564909-15564937)
chr7 (264-292)||(28548266-28548294)
chr7 (265-293)||(30769703-30769731)
chr7 (264-292)||(42276089-42276117)
chr7 (260-292)||(45154584-45154616)
[»] chr1 (23 HSPs)
chr1 (258-310)||(43641010-43641062)
chr1 (263-304)||(29706736-29706777)
chr1 (264-304)||(26585206-26585246)
chr1 (257-304)||(27352621-27352668)
chr1 (263-293)||(23044915-23044945)
chr1 (264-310)||(23554749-23554795)
chr1 (256-294)||(49596225-49596263)
chr1 (265-294)||(1689390-1689419)
chr1 (262-291)||(10121772-10121801)
chr1 (263-292)||(18610770-18610799)
chr1 (260-297)||(39757174-39757211)
chr1 (260-297)||(39762528-39762565)
chr1 (263-296)||(43612110-43612143)
chr1 (264-297)||(43755718-43755751)
chr1 (266-303)||(52261339-52261376)
chr1 (264-296)||(11947793-11947825)
chr1 (264-328)||(27804836-27804899)
chr1 (266-310)||(31184281-31184325)
chr1 (256-292)||(32811912-32811948)
chr1 (263-291)||(36750529-36750557)
chr1 (264-304)||(42843377-42843417)
chr1 (264-292)||(45042259-45042287)
chr1 (266-310)||(49699779-49699823)
[»] chr2 (20 HSPs)
chr2 (264-310)||(3299132-3299178)
chr2 (263-317)||(8352832-8352886)
chr2 (266-317)||(3091741-3091792)
chr2 (266-308)||(3039864-3039906)
chr2 (265-328)||(10288149-10288216)
chr2 (265-303)||(14891112-14891150)
chr2 (266-324)||(22303203-22303261)
chr2 (265-294)||(4319768-4319797)
chr2 (265-310)||(6884909-6884954)
chr2 (263-296)||(10749720-10749753)
chr2 (263-292)||(18531598-18531627)
chr2 (255-284)||(31296525-31296554)
chr2 (266-298)||(7428433-7428465)
chr2 (266-310)||(14713986-14714030)
chr2 (267-303)||(15505176-15505212)
chr2 (263-307)||(18423791-18423835)
chr2 (264-304)||(18508076-18508116)
chr2 (267-327)||(20508369-20508429)
chr2 (264-292)||(40115524-40115552)
chr2 (270-310)||(43621975-43622015)
[»] scaffold0662 (1 HSPs)
scaffold0662 (265-310)||(1077-1122)
[»] chr6 (10 HSPs)
chr6 (256-297)||(11635607-11635648)
chr6 (267-297)||(736860-736890)
chr6 (262-304)||(29172986-29173028)
chr6 (263-304)||(237431-237472)
chr6 (263-312)||(11743007-11743056)
chr6 (265-310)||(26396502-26396547)
chr6 (263-292)||(27334855-27334884)
chr6 (263-292)||(27395595-27395624)
chr6 (264-296)||(10375658-10375690)
chr6 (265-297)||(28670525-28670557)
[»] scaffold0154 (1 HSPs)
scaffold0154 (265-304)||(4314-4353)
[»] scaffold0003 (1 HSPs)
scaffold0003 (262-317)||(88804-88859)
[»] scaffold0257 (1 HSPs)
scaffold0257 (263-303)||(23978-24018)
[»] scaffold0002 (1 HSPs)
scaffold0002 (266-310)||(440718-440762)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 419 - 547
Target Start/End: Original strand, 38029398 - 38029526
Alignment:
Q  419 taacattactctttctaaaaatatcgatccttgtttagtattactaattttcatcggacaattcttcaagtttaatcatattttctttatacgcacatct 518  Q
    ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  38029398 taacattactctttccaaaagtatcgatctttgtttagtattactaattttcatcggacaattcttcaagtttaatcatattttctttatacacatatct 38029497  T
Q  519 cagccgtcaaaaaacattttttacataaa 547  Q
    |||| ||||||||||||||||||||||||    
T  38029498 cagctgtcaaaaaacattttttacataaa 38029526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 38029228 - 38029312
Alignment:
Q  248 cttagtctatttttgaaagagaaatgatatttgtacaact--attttatgattacttttaaacaattatctcatactcatattgt 330  Q
    ||||||| |||||||||| |||||| |||||||||||||   |||||||||||||||||| |||| | |||||||||||||||||    
T  38029228 cttagtccatttttgaaacagaaataatatttgtacaacaccattttatgattacttttagacaagtctctcatactcatattgt 38029312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 36444469 - 36444422
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||||| |||||||||| |||||| |||||    
T  36444469 aaagagaaatgatatttgtacaaccattttatgataactttttaacaa 36444422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 44272884 - 44272837
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||||||||||| |||  ||||||||||||    
T  44272884 aaagagaaatgatatttgtacaactattttttgacaacttttaaacaa 44272837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 44626602 - 44626643
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  44626602 aaagagaaatgatatttgaacaactattttatgataactttt 44626643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 47014938 - 47014983
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||    
T  47014938 agagaaatgatatttgtacaactattttgtgacaacttttaaacaa 47014983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 18880785 - 18880836
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttttaaacaattatctc 317  Q
    |||||||||||| |||||||| |||||||||| ||||||| |||||| ||||    
T  18880785 gagaaatgatatatgtacaacaattttatgataacttttagacaattttctc 18880836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 297
Target Start/End: Complemental strand, 31833286 - 31833247
Alignment:
Q  258 ttttgaaagagaaatgatatttgtacaactattttatgat 297  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  31833286 ttttgaaagagaaatgatatttttataactattttatgat 31833247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 297
Target Start/End: Complemental strand, 32464674 - 32464644
Alignment:
Q  267 agaaatgatatttgtacaactattttatgat 297  Q
    |||||||||||||||||||||||||||||||    
T  32464674 agaaatgatatttgtacaactattttatgat 32464644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 42853937 - 42853983
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||||||||||||| |||  ||||||| ||||    
T  42853937 aagagaaatgatatttgtacaactattttttgacaacttttagacaa 42853983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 11012140 - 11012185
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||| |||||||||  |||||| |||||    
T  11012140 agagaaatgatatttgtacaaccattttatgacaactttttaacaa 11012185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 24088636 - 24088591
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||| |||||||||  |||||| |||||    
T  24088636 agagaaatgatatttgtacaaccattttatgacaacttttgaacaa 24088591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Complemental strand, 33820410 - 33820381
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||||||||||    
T  33820410 aaagagaaatgatatttgtacaactatttt 33820381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 35661675 - 35661638
Alignment:
Q  259 tttgaaagagaaatgatatttgtacaactattttatga 296  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  35661675 tttgtaagagaaatgatatttgtacaaccattttatga 35661638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 297
Target Start/End: Original strand, 36058403 - 36058436
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgat 297  Q
    |||||||||||||||||| |||||||||||||||    
T  36058403 aagagaaatgatatttgttcaactattttatgat 36058436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 36871239 - 36871202
Alignment:
Q  255 tatttttgaaagagaaatgatatttgtacaactatttt 292  Q
    ||||||| || |||||||||||||||||||||||||||    
T  36871239 tatttttaaatgagaaatgatatttgtacaactatttt 36871202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 42815401 - 42815430
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||||||||||    
T  42815401 aaagagaaatgatatttgtacaactatttt 42815430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 52487350 - 52487309
Alignment:
Q  256 atttttgaaagagaaatgatatttgtacaactattttatgat 297  Q
    |||||||||||| |||||||||||||||||||| ||| ||||    
T  52487350 atttttgaaagataaatgatatttgtacaactaatttgtgat 52487309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 940332 - 940304
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  940332 aagagaaatgatatttgtacaactatttt 940304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 6290460 - 6290488
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  6290460 aagagaaatgatatttgtacaactatttt 6290488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 12241056 - 12241084
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  12241056 aagagaaatgatatttgtacaactatttt 12241084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 29577509 - 29577481
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  29577509 aagagaaatgatatttgtacaactatttt 29577481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 31413848 - 31413820
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  31413848 aagagaaatgatatttgtacaactatttt 31413820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 33093177 - 33093149
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  33093177 aagagaaatgatatttgtacaactatttt 33093149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 39449171 - 39449211
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||||||||||||||| |||||||||||| |||| ||||||    
T  39449171 aagagaaatgatatttatacaactattttgtgataactttt 39449211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 50890146 - 50890118
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  50890146 aagagaaatgatatttgtacaactatttt 50890118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 52430880 - 52430916
Alignment:
Q  269 aaatgatatttgtacaactattttatgattactttta 305  Q
    ||||||||||||||||||||||||||||  |||||||    
T  52430880 aaatgatatttgtacaactattttatgacaactttta 52430916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 53662501 - 53662473
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  53662501 aagagaaatgatatttgtacaactatttt 53662473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 54800996 - 54801044
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattacttttaaacaatt 312  Q
    ||||||||||||||||||||||| | ||| |||| ||||||| ||||||    
T  54800996 aagagaaatgatatttgtacaaccactttgtgataacttttagacaatt 54801044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 54803401 - 54803373
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  54803401 aagagaaatgatatttgtacaactatttt 54803373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 7144574 - 7144621
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  7144574 aaagagaaatgatatttgtacaaccattttatgataacttttaaacaa 7144621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 582939 - 582887
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattacttttaaacaattatctc 317  Q
    ||||||||||||||| |||||||||||| |||| |||||||||||||| ||||    
T  582939 agagaaatgatatttttacaactattttgtgataacttttaaacaattttctc 582887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 29803222 - 29803269
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||||||||||| |||  ||||||||||||    
T  29803222 aaagagaaatgatatttgtacaactattttttgacaacttttaaacaa 29803269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 19844383 - 19844342
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  19844383 aaagagaaatgatatttgtacaactattttttgataactttt 19844342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 35098806 - 35098757
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttttaaacaatt 312  Q
    |||||||||||||||||||||||| ||||| |||| || |||||||||||    
T  35098806 aaagagaaatgatatttgtacaaccattttttgataacatttaaacaatt 35098757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 3154715 - 3154676
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  3154715 agagtaatgatatttgtacaactattttatgataactttt 3154676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 34428157 - 34428204
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||||||||||| |||  ||||||| ||||    
T  34428157 aaagagaaatgatatttgtacaactattttttgacaacttttagacaa 34428204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 35165676 - 35165710
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgat 297  Q
    |||||||||||||||||||||||||||||| ||||    
T  35165676 aaagagaaatgatatttgtacaactattttttgat 35165710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 41179391 - 41179441
Alignment:
Q  260 ttgaaagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||| || ||||| |||||||||||| |||||||||| ||||||||||||    
T  41179391 ttgaatgataaatgttatttgtacaaccattttatgataacttttaaacaa 41179441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 5996664 - 5996693
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||||||||||    
T  5996664 aaagagaaatgatatttgtacaactatttt 5996693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 38919860 - 38919889
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||||||||||    
T  38919860 aaagagaaatgatatttgtacaactatttt 38919889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 12878753 - 12878793
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttt 303  Q
    |||||||||||||||||||||||| ||||||| || |||||    
T  12878753 aaagagaaatgatatttgtacaaccattttattataacttt 12878793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 17489351 - 17489399
Alignment:
Q  269 aaatgatatttgtacaactattttatgattacttttaaacaattatctc 317  Q
    |||||||||||||||||||||||| |||| | ||||| |||||| ||||    
T  17489351 aaatgatatttgtacaactattttttgataatttttacacaattttctc 17489399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 30294865 - 30294829
Alignment:
Q  256 atttttgaaagagaaatgatatttgtacaactatttt 292  Q
    |||||| |||||||||| |||||||||||||||||||    
T  30294865 atttttaaaagagaaataatatttgtacaactatttt 30294829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 36799397 - 36799444
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattacttttaaacaatt 312  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||    
T  36799397 agagaaatgatatttgtacaactattttttgataacttttaaacaatt 36799444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 7867785 - 7867736
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttttaaacaatt 312  Q
    |||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  7867785 aaagagaaatgatatttgtacaactattttgtgacaacttttaaacaatt 7867736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 27198235 - 27198185
Alignment:
Q  262 gaaagagaaatgatatttgtacaactattttatgattacttttaaacaatt 312  Q
    ||||||||||||||||||||||||  ||||| |||| ||||||||||||||    
T  27198235 gaaagagaaatgatatttgtacaatcattttttgataacttttaaacaatt 27198185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 45529017 - 45528969
Alignment:
Q  262 gaaagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||||||||||||||| |||  ||||||| ||||    
T  45529017 gaaagagaaatgatatttgtacaactattttttgacaacttttagacaa 45528969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 297
Target Start/End: Complemental strand, 21239149 - 21239118
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgat 297  Q
    ||||||||||||||||||||||||||||||||    
T  21239149 gagaaatgatatttgtacaactattttatgat 21239118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 1295332 - 1295370
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattactttt 304  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  1295332 gagaaatgatatttgtacaactattttgtgataactttt 1295370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 35987254 - 35987292
Alignment:
Q  272 tgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  35987254 tgatatttgtacaactattttgtgataacttttaaacaa 35987292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 296
Target Start/End: Complemental strand, 37134677 - 37134647
Alignment:
Q  266 gagaaatgatatttgtacaactattttatga 296  Q
    |||||||||||||||||||||||||||||||    
T  37134677 gagaaatgatatttgtacaactattttatga 37134647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 884531 - 884560
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||||||||||    
T  884531 aaagagaaatgatatttgtacaactatttt 884560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 297
Target Start/End: Complemental strand, 20549458 - 20549425
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgat 297  Q
    ||||||||||||||||||||| ||||||||||||    
T  20549458 aagagaaatgatatttgtacatctattttatgat 20549425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Complemental strand, 40159912 - 40159883
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||||||||||    
T  40159912 aaagagaaatgatatttgtacaactatttt 40159883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 43499635 - 43499594
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||||||||||||||||||||||| | |||||||| ||||||    
T  43499635 aaagagaaatgatatttgtacaaccactttatgataactttt 43499594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 45186634 - 45186597
Alignment:
Q  255 tatttttgaaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  45186634 tatttttgaaagagaaaagatatttgtacaaccatttt 45186597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Complemental strand, 50559286 - 50559257
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||||||||||    
T  50559286 aaagagaaatgatatttgtacaactatttt 50559257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 16139363 - 16139315
Alignment:
Q  269 aaatgatatttgtacaactattttatgattacttttaaacaattatctc 317  Q
    |||| ||||||||||||| |||||||||| |||||| ||||||| ||||    
T  16139363 aaataatatttgtacaaccattttatgataacttttgaacaattttctc 16139315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 31007405 - 31007369
Alignment:
Q  255 tatttttgaaagagaaatgatatttgtacaactattt 291  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  31007405 tattttagaaagagaaatgatatttgtacaaccattt 31007369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 34145610 - 34145582
Alignment:
Q  265 agagaaatgatatttgtacaactatttta 293  Q
    |||||||||||||||||||||||||||||    
T  34145610 agagaaatgatatttgtacaactatttta 34145582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 46952946 - 46952986
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttt 303  Q
    |||||||||||||||||||||||| ||||| |||| |||||    
T  46952946 aaagagaaatgatatttgtacaaccattttttgataacttt 46952986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 53021187 - 53021215
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  53021187 aagagaaatgatatttgtacaactatttt 53021215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 29913564 - 29913610
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttttaaacaatt 312  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  29913564 gagaaatgatatttgtacaactattttatgataatttttaaacaatt 29913610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 14531621 - 14531659
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  14531621 gagaaatgatatttgtacaactattttatgataactttt 14531659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 38939258 - 38939223
Alignment:
Q  257 tttttgaaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38939258 tttttgaaagagaaatgatatttctacaactatttt 38939223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 36497659 - 36497705
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||||||||||||| |||  ||||||| ||||    
T  36497659 aagagaaatgatatttgtacaactattttgtgacaacttttagacaa 36497705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 2768145 - 2768198
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattacttttaaacaattatctc 317  Q
    |||||||||||||||||||||||  ||||||||| ||||||  |||||| ||||    
T  2768145 aagagaaatgatatttgtacaaccgttttatgataactttttgacaattctctc 2768198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 23952491 - 23952532
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattactttt 304  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  23952491 aaagagaaatgatatttgtacaattattttgtgatgactttt 23952532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 33605152 - 33605111
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||||||||||||||||| ||||| |||||||||| ||||||    
T  33605152 aaagagaaatgatatttgaacaaccattttatgataactttt 33605111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 34037557 - 34037520
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttt 303  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  34037557 gagagatgatatttgtacaactattttatgataacttt 34037520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 290
Target Start/End: Original strand, 34799744 - 34799773
Alignment:
Q  261 tgaaagagaaatgatatttgtacaactatt 290  Q
    ||||||||||||||||||||||||||||||    
T  34799744 tgaaagagaaatgatatttgtacaactatt 34799773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 40380278 - 40380311
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatga 296  Q
    |||||||||||||||||||||| |||||||||||    
T  40380278 aaagagaaatgatatttgtacatctattttatga 40380311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 42689838 - 42689871
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatga 296  Q
    |||||||||||||||||||||||| |||||||||    
T  42689838 aaagagaaatgatatttgtacaaccattttatga 42689871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 4312547 - 4312579
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgat 297  Q
    |||||||||||||||| ||||||||||||||||    
T  4312547 agagaaatgatatttgaacaactattttatgat 4312579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 9985749 - 9985705
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||| |||||||||||  ||||||| ||||    
T  9985749 gagaaatgatatttgtacatctattttatgacaacttttatacaa 9985705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 12655920 - 12655960
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattactttt 304  Q
    ||||||||||||||||||||||| ||||||| || ||||||    
T  12655920 aagagaaatgatatttgtacaaccattttataataactttt 12655960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 14233706 - 14233678
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  14233706 aagagaaatgatatttgtacaactatttt 14233678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 20852919 - 20852963
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||||| |||||||||| | ||||| ||||    
T  20852919 gagaaatgatatttgtacaaccattttatgataatttttagacaa 20852963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 39021516 - 39021476
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattactttt 304  Q
    ||||||||||||||||||||||| ||||| |||| ||||||    
T  39021516 aagagaaatgatatttgtacaaccattttgtgataactttt 39021476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 42012663 - 42012623
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||||||||||||||| |||||||| |||||||| ||||||    
T  42012663 aagagaaatgatatttatacaactactttatgataactttt 42012623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 22692083 - 22692135
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattacttttaaacaattatctc 317  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||| ||||    
T  22692083 agagaaatgatatttgtacaaccattttatgacaacttttaaacaattttctc 22692135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 23389672 - 23389638
Alignment:
Q  258 ttttgaaagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||||||||    
T  23389672 ttttgaaagagaaatgatatttgtacaactatttt 23389638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 5068696 - 5068656
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattactttt 304  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  5068696 aagagaaatgatatttgtacaaccattttatgataactttt 5068656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 16567312 - 16567367
Alignment:
Q  262 gaaagagaaatgatatttgtacaactattttatgattacttttaaacaattatctc 317  Q
    ||||||||||||||||||||||||| ||||||| || ||||||  |||||| ||||    
T  16567312 gaaagagaaatgatatttgtacaaccattttattataactttttgacaattttctc 16567367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 16598350 - 16598295
Alignment:
Q  262 gaaagagaaatgatatttgtacaactattttatgattacttttaaacaattatctc 317  Q
    ||||||||||||||||||||||||| ||||||| || ||||||  |||||| ||||    
T  16598350 gaaagagaaatgatatttgtacaaccattttattataactttttgacaattttctc 16598295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 34992404 - 34992365
Alignment:
Q  257 tttttgaaagagaaatgatatttgtacaactattttatga 296  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  34992404 ttttttaaagagaaatgatatttgtacaaccattttatga 34992365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 37392040 - 37392087
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||||| ||||| |||  ||||||||||||    
T  37392040 aaagagaaatgatatttgtacaaccattttttgacaacttttaaacaa 37392087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 297
Target Start/End: Complemental strand, 10015025 - 10014995
Alignment:
Q  267 agaaatgatatttgtacaactattttatgat 297  Q
    |||||||||||||||||||||||||||||||    
T  10015025 agaaatgatatttgtacaactattttatgat 10014995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 296
Target Start/End: Original strand, 26153646 - 26153676
Alignment:
Q  266 gagaaatgatatttgtacaactattttatga 296  Q
    |||||||||||||||||||||||||||||||    
T  26153646 gagaaatgatatttgtacaactattttatga 26153676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 2323301 - 2323334
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatga 296  Q
    |||||||||||||||||||||||| |||||||||    
T  2323301 aaagagaaatgatatttgtacaacaattttatga 2323334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 297
Target Start/End: Original strand, 7990077 - 7990110
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgat 297  Q
    ||||||||||||||||||||| ||||||||||||    
T  7990077 aagagaaatgatatttgtacatctattttatgat 7990110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 27704432 - 27704461
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||||||||||    
T  27704432 aaagagaaatgatatttgtacaactatttt 27704461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 40693600 - 40693555
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||||||||| |||  ||||||| ||||    
T  40693600 agagaaatgatatttgtacaactattttttgacaacttttagacaa 40693555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 47530364 - 47530311
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattacttttaaacaattatctc 317  Q
    |||||||||||||||| |||||| |||||||||  |||||| ||||||| ||||    
T  47530364 aagagaaatgatatttatacaaccattttatgacaacttttgaacaattttctc 47530311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 2849594 - 2849554
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  2849594 aagagaaatgatatttgtacaattattttttgataactttt 2849554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 10945020 - 10945060
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||| |||||||||||| |||||||||||||||| ||||||    
T  10945020 aagataaatgatatttgaacaactattttatgataactttt 10945060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 15564909 - 15564937
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  15564909 aagagaaatgatatttgtacaactatttt 15564937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 28548294 - 28548266
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  28548294 aagagaaatgatatttgtacaactatttt 28548266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 30769731 - 30769703
Alignment:
Q  265 agagaaatgatatttgtacaactatttta 293  Q
    |||||||||||||||||||||||||||||    
T  30769731 agagaaatgatatttgtacaactatttta 30769703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 42276089 - 42276117
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  42276089 aagagaaatgatatttgtacaactatttt 42276117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 45154616 - 45154584
Alignment:
Q  260 ttgaaagagaaatgatatttgtacaactatttt 292  Q
    |||| ||||||||||||||||||||||||||||    
T  45154616 ttgatagagaaatgatatttgtacaactatttt 45154584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 43641062 - 43641010
Alignment:
Q  258 ttttgaaagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||| |||||||||||||||||||||| ||||| ||| |||||||||||||    
T  43641062 ttttgatagagaaatgatatttgtacaaccattttttgactacttttaaacaa 43641010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 29706777 - 29706736
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||||||||||||||||||||||| |||||||||| ||||||    
T  29706777 aaagagaaatgatatttgtacaaccattttatgataactttt 29706736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 26585246 - 26585206
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattactttt 304  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  26585246 aagagaaatgatatttgtacaactattttgtgataactttt 26585206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 27352621 - 27352668
Alignment:
Q  257 tttttgaaagagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||| ||||||||||||||||||||||||| ||||| |||| ||||||    
T  27352621 ttttagaaagagaaatgatatttgtacaaccattttgtgataactttt 27352668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 293
Target Start/End: Complemental strand, 23044945 - 23044915
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttta 293  Q
    |||||||||||||||||||||||||||||||    
T  23044945 aaagagaaatgatatttgtacaactatttta 23044915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 23554749 - 23554795
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||||||| ||||| |||| | ||||||||||    
T  23554749 aagagaaatgatatttgtacaaccattttttgataatttttaaacaa 23554795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 49596225 - 49596263
Alignment:
Q  256 atttttgaaagagaaatgatatttgtacaactattttat 294  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  49596225 attttggaaagagaaatgatatttgtacaaccattttat 49596263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 1689390 - 1689419
Alignment:
Q  265 agagaaatgatatttgtacaactattttat 294  Q
    ||||||||||||||||||||||||||||||    
T  1689390 agagaaatgatatttgtacaactattttat 1689419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 291
Target Start/End: Original strand, 10121772 - 10121801
Alignment:
Q  262 gaaagagaaatgatatttgtacaactattt 291  Q
    ||||||||||||||||||||||||||||||    
T  10121772 gaaagagaaatgatatttgtacaactattt 10121801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 18610770 - 18610799
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||||||||||    
T  18610770 aaagagaaatgatatttgtacaactatttt 18610799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 39757174 - 39757211
Alignment:
Q  260 ttgaaagagaaatgatatttgtacaactattttatgat 297  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  39757174 ttgaaaaagaaatgatatttgaacaactattttatgat 39757211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 39762528 - 39762565
Alignment:
Q  260 ttgaaagagaaatgatatttgtacaactattttatgat 297  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  39762528 ttgaaaaagaaatgatatttgaacaactattttatgat 39762565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 43612143 - 43612110
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatga 296  Q
    |||||||||||||||||||||||| |||||||||    
T  43612143 aaagagaaatgatatttgtacaaccattttatga 43612110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 297
Target Start/End: Complemental strand, 43755751 - 43755718
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgat 297  Q
    ||||||||||||||||||||||| ||||||||||    
T  43755751 aagagaaatgatatttgtacaaccattttatgat 43755718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 52261339 - 52261376
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttt 303  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  52261339 gagaaatgatatttgaacaactattttatgataacttt 52261376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 11947793 - 11947825
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatga 296  Q
    ||||||||||||||||||||||| |||||||||    
T  11947793 aagagaaatgatatttgtacaaccattttatga 11947825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 328
Target Start/End: Complemental strand, 27804899 - 27804836
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattacttttaaacaattatctcatactcatatt 328  Q
    |||| |||||||||||||||||| ||||| |||  |||||||||  | |||||||||||||||||    
T  27804899 aagataaatgatatttgtacaac-attttttgacaacttttaaaacaatatctcatactcatatt 27804836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 31184281 - 31184325
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||||| |||||||||  |||||| |||||    
T  31184281 gagaaatgatatttgtacaaccattttatgacaactttttaacaa 31184325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 32811948 - 32811912
Alignment:
Q  256 atttttgaaagagaaatgatatttgtacaactatttt 292  Q
    |||||| |||||||||||||||||||||||| |||||    
T  32811948 atttttaaaagagaaatgatatttgtacaacaatttt 32811912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 291
Target Start/End: Complemental strand, 36750557 - 36750529
Alignment:
Q  263 aaagagaaatgatatttgtacaactattt 291  Q
    |||||||||||||||||||||||||||||    
T  36750557 aaagagaaatgatatttgtacaactattt 36750529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 42843417 - 42843377
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattactttt 304  Q
    ||||||||||||||||||||||| ||||| |||| ||||||    
T  42843417 aagagaaatgatatttgtacaacaattttttgataactttt 42843377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 45042259 - 45042287
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  45042259 aagagaaatgatatttgtacaactatttt 45042287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 49699823 - 49699779
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||||| |||||||||| | |||| |||||    
T  49699823 gagaaatgatatttgtacaaccattttatgataattttttaacaa 49699779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 3299178 - 3299132
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||    
T  3299178 aagagaaatgatatttgtacaaccattttatgacaacttttaaacaa 3299132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 8352832 - 8352886
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttttaaacaattatctc 317  Q
    |||||||||||||||||||||||||||||| | || ||||||| |||||| ||||    
T  8352832 aaagagaaatgatatttgtacaactattttttaataacttttagacaattttctc 8352886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 3091741 - 3091792
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttttaaacaattatctc 317  Q
    ||||||||||||||||||||||||||| |||| ||||||  |||||| ||||    
T  3091741 gagaaatgatatttgtacaactattttgtgataactttttgacaattttctc 3091792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 3039864 - 3039906
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttttaaac 308  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||    
T  3039864 gagaaatgatattcgtacaactattttgtgataacttttaaac 3039906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 10288149 - 10288216
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattacttttaaacaa----ttatctcatactcatatt 328  Q
    |||||||||||||||||||||||||||| |||| | ||||| ||||    || |||||||||||||||    
T  10288149 agagaaatgatatttgtacaactattttgtgataatttttagacaactttttctctcatactcatatt 10288216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 14891150 - 14891112
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattacttt 303  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  14891150 agagaaatgatatttgtacaactattttgtgataacttt 14891112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 22303203 - 22303261
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttttaaacaattatctcatactca 324  Q
    ||||||||||||||||||||||||||| |||  |||||| |||||   |||||||||||    
T  22303203 gagaaatgatatttgtacaactattttttgacaacttttgaacaacactctcatactca 22303261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 4319768 - 4319797
Alignment:
Q  265 agagaaatgatatttgtacaactattttat 294  Q
    ||||||||||||||||||||||||||||||    
T  4319768 agagaaatgatatttgtacaactattttat 4319797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 6884909 - 6884954
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||||| ||| |||| ||||||| ||||    
T  6884909 agagaaatgatatttgtacaactaatttgtgataacttttatacaa 6884954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 10749753 - 10749720
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatga 296  Q
    |||||||||||||||||||||||| |||||||||    
T  10749753 aaagagaaatgatatttgtacaaccattttatga 10749720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 18531598 - 18531627
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||||||||||    
T  18531598 aaagagaaatgatatttgtacaactatttt 18531627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 31296525 - 31296554
Alignment:
Q  255 tatttttgaaagagaaatgatatttgtaca 284  Q
    ||||||||||||||||||||||||||||||    
T  31296525 tatttttgaaagagaaatgatatttgtaca 31296554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 7428433 - 7428465
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgatt 298  Q
    ||||||||||||||||||||||||||| |||||    
T  7428433 gagaaatgatatttgtacaactattttgtgatt 7428465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 14713986 - 14714030
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||| | |||||||||  ||||||||||||    
T  14713986 gagaaatgatatttgtacatcaattttatgacaacttttaaacaa 14714030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 15505176 - 15505212
Alignment:
Q  267 agaaatgatatttgtacaactattttatgattacttt 303  Q
    |||||||||||||| |||||||||||||||| |||||    
T  15505176 agaaatgatatttgaacaactattttatgataacttt 15505212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 18423835 - 18423791
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttttaaa 307  Q
    |||||||||||||||||||||| ||||||| ||||  ||||||||    
T  18423835 aaagagaaatgatatttgtacatctattttttgatatcttttaaa 18423791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 18508076 - 18508116
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatgattactttt 304  Q
    ||||||||||||||||||||| | |||||||||| ||||||    
T  18508076 aagagaaatgatatttgtacatccattttatgataactttt 18508116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 20508429 - 20508369
Alignment:
Q  267 agaaatgatatttgtacaactattttatgattacttttaaacaattatctcatactcatat 327  Q
    |||||| |||||| |||||||||||||| |  ||||||| |||| | ||||||||||||||    
T  20508429 agaaataatatttatacaactattttataacaacttttatacaactctctcatactcatat 20508369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 40115524 - 40115552
Alignment:
Q  264 aagagaaatgatatttgtacaactatttt 292  Q
    |||||||||||||||||||||||||||||    
T  40115524 aagagaaatgatatttgtacaactatttt 40115552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 43622015 - 43621975
Alignment:
Q  270 aatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||||||||  |||||| |||||    
T  43622015 aatgatatttgtacaactattttatgacaacttttgaacaa 43621975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 1077 - 1122
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||    
T  1077 agagaaatgatatttgtacaactattttgtgacaacttttaaacaa 1122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 11635607 - 11635648
Alignment:
Q  256 atttttgaaagagaaatgatatttgtacaactattttatgat 297  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  11635607 atttttaaaagagaaatgatatttgtacaacaattttatgat 11635648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 297
Target Start/End: Complemental strand, 736890 - 736860
Alignment:
Q  267 agaaatgatatttgtacaactattttatgat 297  Q
    |||||||||||||||||||||||||||||||    
T  736890 agaaatgatatttgtacaactattttatgat 736860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 29172986 - 29173028
Alignment:
Q  262 gaaagagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||||| |||||||||||||||||| |||||||||| ||||||    
T  29172986 gaaagataaatgatatttgtacaaccattttatgataactttt 29173028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 237472 - 237431
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||||||||||||||||||||||| || || |||||||||||    
T  237472 aaagagaaatgatatttgtacaaccatcttgtgattactttt 237431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 11743056 - 11743007
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttttaaacaatt 312  Q
    |||||||||| ||||||||||||||||||| |||| | ||||| ||||||    
T  11743056 aaagagaaataatatttgtacaactattttttgataatttttagacaatt 11743007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 26396547 - 26396502
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||||| |||||||| || | ||||||||||    
T  26396547 agagaaatgatatttgtacaattattttataataatttttaaacaa 26396502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 27334855 - 27334884
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||||||||||    
T  27334855 aaagagaaatgatatttgtacaactatttt 27334884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 27395595 - 27395624
Alignment:
Q  263 aaagagaaatgatatttgtacaactatttt 292  Q
    ||||||||||||||||||||||||||||||    
T  27395595 aaagagaaatgatatttgtacaactatttt 27395624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 10375658 - 10375690
Alignment:
Q  264 aagagaaatgatatttgtacaactattttatga 296  Q
    |||||||||||||| ||||||||||||||||||    
T  10375658 aagagaaatgatatgtgtacaactattttatga 10375690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 28670525 - 28670557
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgat 297  Q
    |||||||||||||||||||||| ||||||||||    
T  28670525 agagaaatgatatttgtacaaccattttatgat 28670557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 4314 - 4353
Alignment:
Q  265 agagaaatgatatttgtacaactattttatgattactttt 304  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  4314 agagaaatgatatttgtacaaccattttatgataactttt 4353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 88804 - 88859
Alignment:
Q  262 gaaagagaaatgatatttgtacaactattttatgattacttttaaacaattatctc 317  Q
    ||||||||||||||||||||||||| | ||| |||| ||||||| |||||| ||||    
T  88804 gaaagagaaatgatatttgtacaaccaatttgtgataacttttatacaattttctc 88859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 23978 - 24018
Alignment:
Q  263 aaagagaaatgatatttgtacaactattttatgattacttt 303  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  23978 aaagagaaatgatatttgaacaaccattttatgataacttt 24018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 440718 - 440762
Alignment:
Q  266 gagaaatgatatttgtacaactattttatgattacttttaaacaa 310  Q
    ||||||||||||||||||||||| |||||||  ||||||| ||||    
T  440718 gagaaatgatatttgtacaactactttatgacaacttttagacaa 440762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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