View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0015-INSERTION-3 (Length: 752)
Name: NF0015-INSERTION-3
Description: NF0015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0015-INSERTION-3 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 122 - 430
Target Start/End: Complemental strand, 11646901 - 11646601
Alignment:
| Q |
122 |
ttcatggtcttgataaccaattttcttgtcgaatcacacacttaaaaatacaaactaacacatacccaccacatattatgtctttgttgattaattttct |
221 |
Q |
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| T |
11646901 |
ttcatggtcttgataaccaattttcttgtcgaatcacacgcttaaaaatacaaactaacacatacccaccacatattatgtctttgttgattaattttct |
11646802 |
T |
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| Q |
222 |
tattataggcaaatattaatatattagttgttatattaatatttttctagagtaaagttggaccataattcatctattataggttggcgatgctataggt |
321 |
Q |
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| T |
11646801 |
tattataggcaaatattaatatattagttgttatattaatatttttctagagtaaagttggaccataatttatctattataggttggcgatgctataggt |
11646702 |
T |
|
| Q |
322 |
accatatatagatatatatttggtttttctcttgtttagtctacgttatggtgtttttagcataatatttacgggttagcagtcattttgatttttaaca |
421 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |
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| T |
11646701 |
accatatatagatatatatttggtttttctcttgtt-----tacgttatggtgtttttagcataatatttacgagttagcaatcattttga---ttaaca |
11646610 |
T |
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| Q |
422 |
tgtgagata |
430 |
Q |
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||||||||| |
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| T |
11646609 |
tgtgagata |
11646601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 429 - 747
Target Start/End: Complemental strand, 11646326 - 11646042
Alignment:
| Q |
429 |
tattgtttatagtttttaaagcgtatagaaattgcaaacacgtcatcaaacatctgcacagtttcgttaatgtgttcaccgatcgatggaatctttttta |
528 |
Q |
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| T |
11646326 |
tattgtttatagtttttaaa-cgtattgaaattgcaaacacgtcatcaaacatctgcacactttcgt------------------atggaatcttgttta |
11646246 |
T |
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| Q |
529 |
cattaattagttggaacaaacgtctttaattaatcattttagtcgtcaaacatatcttgttactcattttggtcctaaaatttggtcctaacatatcaag |
628 |
Q |
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| T |
11646245 |
cattaattagttggaacaaacgtctttaattagtaattttagtcgtcaaacatatcttgttactcattttggtcctaaaat-------------atcaag |
11646159 |
T |
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| Q |
629 |
ttagtttgtaaaataataaacataaa-acacttgcggatgcacttacaactttaatatattcagggattacaatgacaacgcctcacatattcagaatgt |
727 |
Q |
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| T |
11646158 |
ttagtttgtaaaataataaacataaagacacttgcggatgcacttgcaactttaatacatttagagattacaatgacaacacctcacatattcagagtgt |
11646059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 11646038 - 11645932
Alignment:
| Q |
5 |
gacatggcatgataattttgacaattttaattgtattctgttttattgtaaattgtcccgagcacctcacgaagcatacatgttaaacaacagtggaagg |
104 |
Q |
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|||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
11646038 |
gacatgacaagataattttgacaattttaattgtattgtgttttattgtaaattgtcccgagcacctcacgaagcatacgtgtta---aacagtggaagg |
11645942 |
T |
|
| Q |
105 |
gtgtgaaatc |
114 |
Q |
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| T |
11645941 |
gtgtgaaatc |
11645932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 483 - 550
Target Start/End: Original strand, 28000 - 28068
Alignment:
| Q |
483 |
tgcacagtttcgttaatgtg-ttcaccgatcgatggaatcttttttacattaattagttggaacaaacg |
550 |
Q |
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| T |
28000 |
tgcacacttccgttaatgtgcttcaccgatcgatggaatcttttttacattaattagtcggaccaaacg |
28068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 494 - 550
Target Start/End: Complemental strand, 2700622 - 2700565
Alignment:
| Q |
494 |
gttaatgtg-ttcaccgatcgatggaatcttttttacattaattagttggaacaaacg |
550 |
Q |
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| T |
2700622 |
gttaatgtgcttcaccgatcgatggaatcttttttacattaattagtcggaccaaacg |
2700565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 14628531 - 14628471
Alignment:
| Q |
120 |
atttcatggtcttgataaccaattttcttgtcgaatcacacacttaaaaatacaaactaaca |
181 |
Q |
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| T |
14628531 |
atttcatgatcttaataaccaattttcttgtcgaaacacacactt-aaaatacagactaaca |
14628471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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