View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0015-INSERTION-5 (Length: 483)
Name: NF0015-INSERTION-5
Description: NF0015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0015-INSERTION-5 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 403
Target Start/End: Original strand, 9107967 - 9108367
Alignment:
| Q |
2 |
cgatccacatgtaaaagtgaattaatttataataaaatcaatatgaatcgatttacaaacatcataatactattttaggttattttcagagaagtgattc |
101 |
Q |
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|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
9107967 |
cgatccacgtgtaaaattgaattaatttataataaaatcaatatgaatcgatttacaaacatcataaaactattttaggttattttcagagaagtgaatt |
9108066 |
T |
|
| Q |
102 |
gattcataattacaatagtgtgatttactaagtggagaaaacttaaaacataattatgaaatcatgaaggatactgatatacatccaattctacttaatc |
201 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||| ||| |
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| T |
9108067 |
gattcataattacaatagtgtgatttactaagtggagaaaacttaaaacataattataaaaccatgaaggatactcatatacattcaattctacttgatc |
9108166 |
T |
|
| Q |
202 |
ctaattctgacatctaatcaaaaacaagcctccaaaatgtgctcaatctttcctttaggtatacaaagtgttccccaagtgttaaccctaannnnnnnnn |
301 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| || | |||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9108167 |
ctaattctgacatctaataaaaaacaagcctccaaaaagtacccaatgtttcctttaggtatac-aagtgttccccaagtgttaaccctaattttttgtt |
9108265 |
T |
|
| Q |
302 |
nnnngtaccgaaagtagacttttataatagtaattttcgcacagaaacgcctagtatttcagtttaaaagcttggtgcatgaggctgtgtgcaaatggtg |
401 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| |
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|
| T |
9108266 |
ttttgtaccgaaactagacttttataatagtaattttcgcacagaaacgcctagtatttcagtttaaaagctagatgcatgtggctgtgtgcaaatggtg |
9108365 |
T |
|
| Q |
402 |
cg |
403 |
Q |
| |
|
|| |
|
|
| T |
9108366 |
cg |
9108367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 482
Target Start/End: Original strand, 28314000 - 28314032
Alignment:
| Q |
450 |
tggcttttgatacatactgatacatgtgttgcc |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
28314000 |
tggcttttgatacatactgatacatgtgttgcc |
28314032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 482
Target Start/End: Original strand, 29156312 - 29156344
Alignment:
| Q |
450 |
tggcttttgatacatactgatacatgtgttgcc |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
29156312 |
tggcttttgatacatactgatacatgtgttgcc |
29156344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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