View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0017-INSERTION-2 (Length: 499)

Name: NF0017-INSERTION-2
Description: NF0017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0017-INSERTION-2
NF0017-INSERTION-2
[»] chr1 (4 HSPs)
chr1 (8-499)||(34593113-34593602)
chr1 (14-75)||(34577750-34577811)
chr1 (346-395)||(2583065-2583114)
chr1 (182-238)||(34577609-34577665)
[»] chr5 (2 HSPs)
chr5 (289-396)||(25538790-25538894)
chr5 (346-381)||(24122981-24123016)
[»] chr6 (6 HSPs)
chr6 (14-77)||(32589981-32590044)
chr6 (14-77)||(32600429-32600492)
chr6 (179-238)||(32589846-32589905)
chr6 (179-238)||(32600294-32600353)
chr6 (315-396)||(20589647-20589726)
chr6 (181-243)||(24884037-24884099)
[»] scaffold0437 (1 HSPs)
scaffold0437 (346-396)||(14315-14365)
[»] chr3 (2 HSPs)
chr3 (346-396)||(16038000-16038050)
chr3 (346-396)||(16053496-16053546)
[»] chr2 (1 HSPs)
chr2 (346-396)||(20477468-20477518)


Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 499
Target Start/End: Complemental strand, 34593602 - 34593113
Alignment:
Q  8 attcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcatgaattactaga 107  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593602 attcgtgcaatggataataccacatatgaattaataactaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcatgaattactaga 34593503  T
Q  108 aagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatctaattttccttctgttattgcagataaactaggagttcaaggaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  34593502 aagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatcaaattttccttctgttattgcagacaaactaggagttcaaggaa 34593403  T
Q  208 agaaagtgaaaagtactaatgatttggaggtaattttcttgttttttgatcccatgatttcatacactatccnnnnnnnnnaataaaatttttgaggtag 307  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||         |||||||||||||||||||    
T  34593402 agaaagtgaaaagtactaatgatttggaggtaactttcttgt-ttttgatcccttgatttcatacactatcctttttttttaataaaatttttgaggtag 34593304  T
Q  308 gcgttagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttatnnnnnnnncca 407  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||         ||    
T  34593303 gcggtagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgtttcctcttgatatctgtcctatctcctggcttataaaaaaaa-ca 34593205  T
Q  408 tacaccatccctaccatactatctcacgggttgatgcccgacaccaacacatttgattttatttaatcattcttgttttcttaaattatact 499  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593204 tacactatccctaccatactatctcacgggttgatgcccgacaccaacacatttgattttatttaatcattcttgttttcttaaattatact 34593113  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 34577811 - 34577750
Alignment:
Q  14 gcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaagg 75  Q
    |||||||||| ||||||||||||| | |||| |||||| |||||||||||||||||||||||    
T  34577811 gcaatggataataccacatatgaattgataagcaactcagaagttattgcagtaaaccaagg 34577750  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 2583114 - 2583065
Alignment:
Q  346 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggctta 395  Q
    ||||| ||||||| |||| |||||||||||||||||| |||||| |||||    
T  2583114 agttgggatgtcgatgatgcctcttgatgtctgtcctctctccttgctta 2583065  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 34577665 - 34577609
Alignment:
Q  182 tgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt 238  Q
    |||||||||||| |||||||| ||||||||||| ||||| |  |||||||| |||||    
T  34577665 tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt 34577609  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 25538790 - 25538894
Alignment:
Q  289 aataaaatttttgaggtaggcgttagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgatgtctgtcctatctcc 388  Q
    ||||||||||||||| |||||| |||||||| ||  ||||||||| |||    | |||||||  ||||||||| ||||||||||||  ||||||||||||    
T  25538790 aataaaatttttgagttaggcggtagaggatagagattctccgagatgc---gatccagttggaatgtcggtgtttcctcttgatgcatgtcctatctcc 25538886  T
Q  389 tggcttat 396  Q
    || |||||    
T  25538887 tgacttat 25538894  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 381
Target Start/End: Original strand, 24122981 - 24123016
Alignment:
Q  346 agttgagatgtcggtgattcctcttgatgtctgtcc 381  Q
    |||||||||||||||| |||||||||||||||||||    
T  24122981 agttgagatgtcggtgtttcctcttgatgtctgtcc 24123016  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 32590044 - 32589981
Alignment:
Q  14 gcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggta 77  Q
    |||||||||| || ||| |||||| | |||| |||||| |||||||||||||||||||||||||    
T  32590044 gcaatggataatatcacgtatgaattgataagcaactctgaagttattgcagtaaaccaaggta 32589981  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 32600492 - 32600429
Alignment:
Q  14 gcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggta 77  Q
    |||||||||| || ||| |||||| | |||| |||||| |||||||||||||||||||||||||    
T  32600492 gcaatggataatatcacgtatgaattgataagcaactctgaagttattgcagtaaaccaaggta 32600429  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 32589905 - 32589846
Alignment:
Q  179 tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt 238  Q
    ||||||||||||||| |||||||| ||||||||||| ||||| |  |||||||| |||||    
T  32589905 tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt 32589846  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 32600353 - 32600294
Alignment:
Q  179 tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt 238  Q
    ||||||||||||||| |||||||| ||||||||||| ||||| |  |||||||| |||||    
T  32600353 tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt 32600294  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 20589647 - 20589726
Alignment:
Q  315 aggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 396  Q
    |||||||| |||||||| ||||||| |  | |||||||||||||| | | |||||||||| ||||||| |||||||| ||||    
T  20589647 aggatggaggttctccggggtgccaac--ctagttgagatgtcggaggtccctcttgatgcctgtcctttctcctggtttat 20589726  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 24884037 - 24884099
Alignment:
Q  181 ttgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattt 243  Q
    ||||||| ||| ||||| ||||||| ||||| |||||||||| | ||||||||||||| ||||    
T  24884037 ttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt 24884099  T

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Target: scaffold0437 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 14365 - 14315
Alignment:
Q  346 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 396  Q
    ||||| ||||||| |||| |||||||||||||||||| |||||| ||||||    
T  14365 agttgggatgtcgatgatgcctcttgatgtctgtcctctctccttgcttat 14315  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 16038000 - 16038050
Alignment:
Q  346 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 396  Q
    ||||||||||||| |||| |||||||||||||||| | |||||| ||||||    
T  16038000 agttgagatgtcgatgatgcctcttgatgtctgtcatctctccttgcttat 16038050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 16053496 - 16053546
Alignment:
Q  346 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 396  Q
    ||||||||||||| |||| |||||||||||||||| | |||||| ||||||    
T  16053496 agttgagatgtcgatgatgcctcttgatgtctgtcatctctccttgcttat 16053546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 20477468 - 20477518
Alignment:
Q  346 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 396  Q
    ||||| ||||||| |||| |||||||||||||||||| |||||| ||||||    
T  20477468 agttgggatgtcgatgatgcctcttgatgtctgtcctttctccttgcttat 20477518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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