View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0017-INSERTION-3 (Length: 449)
Name: NF0017-INSERTION-3
Description: NF0017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0017-INSERTION-3 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 8e-59; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 175 - 402
Target Start/End: Original strand, 30936229 - 30936453
Alignment:
| Q |
175 |
tcatatttgttaggctaaccacaaattcaagaagtactata----gtaagtaagagtttcatacatgtttatagtgatagtaagtttcatacatgcaaat |
270 |
Q |
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| T |
30936229 |
tcatacttgttaggccaaccacaaattcaagaagtactatatatagtaagtaagagcttcatgcatgttcatagggatagtaagtttcatacatg-aaat |
30936327 |
T |
|
| Q |
271 |
taagcaaccaagtaacaaaaagtggtgacagaaaatctcactcaccttgggaaccaagaaactctgggactggaaattctcaagcaccaaggttgttctg |
370 |
Q |
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| T |
30936328 |
taagcaaccaagtaacaaaaagtggagacagaaagtctcactaaccttgggaaccaagaaact------gtggaaattctcaggaaccaacgttgttctg |
30936421 |
T |
|
| Q |
371 |
tctgccctgaaacgtggaagtaagaaaggaag |
402 |
Q |
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|||||| | |||||||||||||| ||||||| |
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| T |
30936422 |
tctgccttaaaacgtggaagtaaagaaggaag |
30936453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 30966348 - 30966462
Alignment:
| Q |
18 |
agctaaaaacatattca-gaaccaaaacgactaaatttggatgtgtttgcaattttgatacattgaagtactattagaatatctttctgtatttatgtgt |
116 |
Q |
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| T |
30966348 |
agctaaaaacatattcaagaacaaaaccgactaaagttggatgtgtttgcaattttgatacattgaattactattagaacatctttctgtattaatgtgt |
30966447 |
T |
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| Q |
117 |
atattattggaaata |
131 |
Q |
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| T |
30966448 |
atagtattggaaata |
30966462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 30957232 - 30957333
Alignment:
| Q |
34 |
agaaccaaaacgactaaatttggatgtgtttgcaattttgatacattgaagtactattagaatatctttctgtatttatgtgtatattattggaaataat |
133 |
Q |
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| T |
30957232 |
agaaccaaaccgactaaacttggatgtgtttgcaattttgatac-ttgaagtactattagaataactttttgtattaatgtgtatattattcgaaataat |
30957330 |
T |
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| Q |
134 |
tat |
136 |
Q |
| |
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||| |
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| T |
30957331 |
tat |
30957333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 30966460 - 30966538
Alignment:
| Q |
259 |
atacatgcaaattaagcaaccaagtaacaaaaagtggtgacagaaaatctcactcaccttgggaaccaagaaactctgg |
337 |
Q |
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| T |
30966460 |
atacatgcaaattaagcaaccaactaacaaaaagtggtgacagaaagtctcgctcaccttgggaaccaagaaactctgg |
30966538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 30957466 - 30957560
Alignment:
| Q |
182 |
tgttaggctaaccacaaattcaagaagtactatagtaagtaagagtttcatacatgtttatagtgatagtaagtttcatacatgcaaattaagcaaccaa |
281 |
Q |
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| T |
30957466 |
tgttaggctaaccacaaattcaagaagtac--cagt-agtaagagtttc--acatgttcatagtgatagtaagtttcacacattcaaattaagcaaccaa |
30957560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 30936056 - 30936148
Alignment:
| Q |
18 |
agctaaaaacatattca-gaaccaaaacgactaaatttggatgtgtttgcaattttgatacattgaagtactattagaatatctttctgtatt |
109 |
Q |
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| T |
30936056 |
agctaaatacatatttaagaaccaaactgactaaatttggatgtgtttgcaatgttgatacattcaagtacgattagaatatttttgtgtatt |
30936148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 449
Target Start/End: Original strand, 30936585 - 30936638
Alignment:
| Q |
396 |
aaggaagcggcaggaaagtcaagataaacttatgaagcacggttacacaaattt |
449 |
Q |
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| T |
30936585 |
aaggaaggggctggaaagtcaagataaacttatgaaccacggttacacaaattt |
30936638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 30957647 - 30957687
Alignment:
| Q |
362 |
gttgttctgtctgccctgaaacgtggaagtaagaaaggaag |
402 |
Q |
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| T |
30957647 |
gttgttctgtctgccctgaaacgtggaagtaaagaaggaag |
30957687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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