View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0017-INSERTION-4 (Length: 308)
Name: NF0017-INSERTION-4
Description: NF0017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0017-INSERTION-4 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 6 - 292
Target Start/End: Original strand, 47782066 - 47782352
Alignment:
| Q |
6 |
atgtggaactcgaacaacgcaacaatggcagatcaacttagtatcttagtaacacaactgttaaatgatttaagaagcaaggctataaatggtgactcac |
105 |
Q |
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| T |
47782066 |
atgtggaactcgaacaacgcaacaatggcagatcaacttagtatcttagtaacacaactattaaatgatttaagaagcaaggctataaatggtgactcac |
47782165 |
T |
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| Q |
106 |
atagtaagtatgttgttggaacatcgccgggtcctagtaataatcaatcaccttctcaacaaagtagtggtgaaacaatatatggtcttgttcagtgtac |
205 |
Q |
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| T |
47782166 |
atagtaagtatgttgttggaacatcgccgggtcctagtaataatcaatcaccttctcaacaaagtagtggtgaaacaatatatggtcttgttcagtgtac |
47782265 |
T |
|
| Q |
206 |
acctgacttgtctggtccacaatgtgatgattgtttgcttcaatctattgctggaatttcaagatttagcaataggagtagtgctag |
292 |
Q |
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| T |
47782266 |
acctgacttgtctggtccacaatgtgatgattgtttgcttcaatctattgctggaatttcaagatttagcaataggagtagtgctag |
47782352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 47788283 - 47788418
Alignment:
| Q |
9 |
tggaactcgaacaacgcaacaatggcagatcaacttagtatcttagtaacacaactgttaaatgatttaagaagcaaggctataaatggtgactcacata |
108 |
Q |
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| T |
47788283 |
tggaacttgaacaatgcaacaatggcagatcaatttaatatcttggtaaaacaattgttgaatgatttaagaagcaaggctataaatggtgactcacatc |
47788382 |
T |
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| Q |
109 |
gtaagtatgttgttggaacatcgccgggtcctagta |
144 |
Q |
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| T |
47788383 |
gtaagtatgttgtgggaaaaatgccgggtcctagta |
47788418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 47788415 - 47788517
Alignment:
| Q |
168 |
agtagtggtgaaacaatatatggtcttgttcagtgtacacctgacttgtctggtccacaatgtgatgattgtttgcttcaatctattgctggaatttcaa |
267 |
Q |
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||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||| |
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| T |
47788415 |
agtagtgatcaaacaatatatggtcttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaa |
47788514 |
T |
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| Q |
268 |
gat |
270 |
Q |
| |
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||| |
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|
| T |
47788515 |
gat |
47788517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 47811648 - 47811733
Alignment:
| Q |
59 |
acaactgttaaatgatttaagaagcaaggctataaatggtgactcacatagtaagtatgttgttggaacatcgccgggtcctagta |
144 |
Q |
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| T |
47811648 |
acaattgttgaatgatttaaaaaacaaggctataaatggtgactcacatcgtaagtatgctgtaggaactttgccaggtcctagta |
47811733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 47811730 - 47811820
Alignment:
| Q |
168 |
agtagtggtgaaacaatatatggtcttgttcagtgtacacctgacttgtctggtccacaatgtgatgattgtttgcttcaatctattgctg |
258 |
Q |
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||||||| | |||||||| ||||||||||||||||||||||||| ||||| | | |||| |||||||| |||||| | |||||||||||| |
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| T |
47811730 |
agtagtgatcaaacaataaatggtcttgttcagtgtacacctgatttgtcggtttcacagtgtgatgactgtttgaatgaatctattgctg |
47811820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 47778303 - 47778356
Alignment:
| Q |
178 |
aaacaatatatggtcttgttcagtgtacacctgacttgtctggtccacaatgtg |
231 |
Q |
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|||| ||||||||||||| ||||||||||||||| || |||||||||||||||| |
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|
| T |
47778303 |
aaactatatatggtcttgctcagtgtacacctgatttatctggtccacaatgtg |
47778356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 47745632 - 47745591
Alignment:
| Q |
176 |
tgaaacaatatatggtcttgttcagtgtacacctgacttgtc |
217 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||| |
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| T |
47745632 |
tgaaaccatatatggtcttgtgcagtgtacacctgacttgtc |
47745591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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