View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0017-INSERTION-5 (Length: 739)

Name: NF0017-INSERTION-5
Description: NF0017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0017-INSERTION-5
NF0017-INSERTION-5
[»] chr8 (30 HSPs)
chr8 (7-552)||(19709667-19710212)
chr8 (556-739)||(19709321-19709503)
chr8 (395-514)||(22450282-22450401)
chr8 (393-511)||(18847191-18847309)
chr8 (408-548)||(41652182-41652324)
chr8 (442-514)||(22455327-22455399)
chr8 (395-515)||(24681008-24681131)
chr8 (405-514)||(15341133-15341242)
chr8 (405-514)||(15430198-15430307)
chr8 (405-514)||(15521502-15521611)
chr8 (557-641)||(22454636-22454719)
chr8 (557-648)||(5892690-5892780)
chr8 (395-481)||(12669075-12669162)
chr8 (397-482)||(13109969-13110055)
chr8 (396-489)||(22713898-22713992)
chr8 (394-481)||(26136371-26136460)
chr8 (405-492)||(23355264-23355352)
chr8 (443-490)||(32351991-32352038)
chr8 (443-490)||(32368652-32368699)
chr8 (566-628)||(15340853-15340914)
chr8 (566-628)||(15429918-15429979)
chr8 (566-628)||(15521222-15521283)
chr8 (434-492)||(25094872-25094930)
chr8 (557-615)||(28291514-28291572)
chr8 (557-631)||(32352277-32352350)
chr8 (557-631)||(32368938-32369011)
chr8 (557-602)||(22449988-22450033)
chr8 (404-475)||(9286641-9286713)
chr8 (557-628)||(6017637-6017707)
chr8 (394-476)||(11647572-11647654)
[»] chr2 (22 HSPs)
chr2 (395-514)||(20515767-20515886)
chr2 (557-706)||(17676659-17676806)
chr2 (556-706)||(15437899-15438049)
chr2 (430-514)||(17162221-17162305)
chr2 (403-489)||(23388904-23388989)
chr2 (556-665)||(32890489-32890597)
chr2 (397-514)||(13370143-13370260)
chr2 (559-636)||(21498048-21498124)
chr2 (556-703)||(2482114-2482258)
chr2 (394-511)||(21498324-21498441)
chr2 (403-514)||(17636491-17636602)
chr2 (405-514)||(17676351-17676460)
chr2 (430-515)||(29891528-29891613)
chr2 (395-490)||(25520670-25520766)
chr2 (395-482)||(32890172-32890260)
chr2 (600-706)||(17637947-17638052)
chr2 (394-496)||(31404327-31404430)
chr2 (445-514)||(19011875-19011944)
chr2 (402-489)||(16467547-16467634)
chr2 (394-481)||(18929092-18929180)
chr2 (450-514)||(31000120-31000184)
chr2 (431-515)||(15438259-15438344)
[»] chr6 (23 HSPs)
chr6 (395-514)||(4031257-4031376)
chr6 (611-739)||(4030011-4030139)
chr6 (395-548)||(242216-242373)
chr6 (395-512)||(28712143-28712259)
chr6 (557-657)||(241944-242044)
chr6 (405-514)||(10163473-10163582)
chr6 (430-514)||(24154379-24154463)
chr6 (397-514)||(34992124-34992240)
chr6 (395-496)||(13003060-13003161)
chr6 (395-514)||(16142319-16142439)
chr6 (397-495)||(17296445-17296544)
chr6 (402-481)||(14767091-14767171)
chr6 (395-548)||(1469435-1469591)
chr6 (445-514)||(6038781-6038850)
chr6 (559-631)||(28712471-28712542)
chr6 (407-489)||(18713496-18713579)
chr6 (556-650)||(16142637-16142731)
chr6 (556-632)||(24154095-24154170)
chr6 (556-633)||(13002771-13002847)
chr6 (576-636)||(16793397-16793456)
chr6 (450-496)||(9404563-9404609)
chr6 (579-649)||(16142966-16143034)
chr6 (431-489)||(23073160-23073218)
[»] chr5 (22 HSPs)
chr5 (402-514)||(28619465-28619577)
chr5 (404-514)||(10235823-10235933)
chr5 (433-552)||(22987533-22987657)
chr5 (395-543)||(24364354-24364509)
chr5 (395-540)||(31533213-31533364)
chr5 (395-543)||(24308816-24308972)
chr5 (557-726)||(28619148-28619314)
chr5 (430-514)||(9422907-9422990)
chr5 (429-481)||(17167564-17167616)
chr5 (395-490)||(24878130-24878226)
chr5 (557-728)||(36499387-36499557)
chr5 (556-649)||(31532949-31533043)
chr5 (557-657)||(21390754-21390854)
chr5 (405-474)||(20646250-20646319)
chr5 (556-654)||(9423216-9423315)
chr5 (447-514)||(21166400-21166467)
chr5 (93-206)||(21380090-21380204)
chr5 (395-472)||(24411112-24411190)
chr5 (395-540)||(25667464-25667617)
chr5 (435-481)||(19924266-19924312)
chr5 (460-514)||(22849415-22849469)
chr5 (645-739)||(24364038-24364133)
[»] chr3 (29 HSPs)
chr3 (395-536)||(14132283-14132430)
chr3 (395-514)||(44451099-44451217)
chr3 (551-671)||(27717858-27717978)
chr3 (395-548)||(12144762-12144920)
chr3 (393-514)||(25466240-25466361)
chr3 (403-514)||(53589336-53589448)
chr3 (395-514)||(4022953-4023072)
chr3 (395-514)||(48895805-48895924)
chr3 (559-636)||(14132041-14132117)
chr3 (407-489)||(25320968-25321050)
chr3 (395-492)||(4026619-4026716)
chr3 (406-548)||(15987349-15987497)
chr3 (403-481)||(27304683-27304762)
chr3 (394-496)||(45280193-45280295)
chr3 (557-631)||(53589043-53589117)
chr3 (397-515)||(27718204-27718323)
chr3 (556-626)||(9101630-9101700)
chr3 (566-618)||(12145106-12145157)
chr3 (395-514)||(1085484-1085597)
chr3 (430-481)||(4765961-4766012)
chr3 (402-481)||(4832798-4832877)
chr3 (395-548)||(9101829-9101988)
chr3 (442-482)||(5495365-5495405)
chr3 (442-514)||(17439367-17439439)
chr3 (397-496)||(7536359-7536457)
chr3 (403-481)||(8737455-8737534)
chr3 (403-481)||(9089693-9089772)
chr3 (692-739)||(12145212-12145259)
chr3 (576-649)||(15759703-15759775)
[»] chr1 (18 HSPs)
chr1 (557-739)||(23455251-23455433)
chr1 (397-548)||(33379526-33379682)
chr1 (395-514)||(24633971-24634090)
chr1 (395-489)||(44787587-44787681)
chr1 (430-514)||(25018448-25018532)
chr1 (403-481)||(36571966-36572045)
chr1 (413-492)||(16083440-16083519)
chr1 (430-489)||(17615069-17615128)
chr1 (430-481)||(33102843-33102894)
chr1 (557-705)||(33379208-33379357)
chr1 (557-631)||(24633241-24633314)
chr1 (559-617)||(25018745-25018802)
chr1 (447-496)||(11110461-11110510)
chr1 (407-484)||(22785329-22785406)
chr1 (576-632)||(13202049-13202104)
chr1 (395-514)||(13966166-13966286)
chr1 (434-481)||(22608133-22608180)
chr1 (395-492)||(13962637-13962735)
[»] chr7 (18 HSPs)
chr7 (556-739)||(25620934-25621115)
chr7 (557-663)||(7524646-7524752)
chr7 (395-514)||(11994150-11994268)
chr7 (404-515)||(7524952-7525063)
chr7 (395-509)||(7948215-7948329)
chr7 (404-514)||(28036940-28037050)
chr7 (556-663)||(4978732-4978840)
chr7 (395-511)||(25621325-25621441)
chr7 (403-489)||(12468695-12468781)
chr7 (429-515)||(18046265-18046351)
chr7 (430-515)||(41131725-41131810)
chr7 (395-511)||(4979056-4979172)
chr7 (566-632)||(12469031-12469096)
chr7 (460-540)||(9022733-9022818)
chr7 (395-496)||(17914328-17914428)
chr7 (557-592)||(1545599-1545634)
chr7 (404-482)||(18084069-18084148)
chr7 (600-708)||(41132069-41132177)
[»] chr4 (17 HSPs)
chr4 (556-663)||(26654030-26654137)
chr4 (404-515)||(16288508-16288619)
chr4 (395-496)||(6337761-6337863)
chr4 (404-510)||(43851308-43851414)
chr4 (406-489)||(24924634-24924717)
chr4 (404-481)||(4732398-4732474)
chr4 (449-514)||(6244147-6244212)
chr4 (404-515)||(9354685-9354797)
chr4 (551-631)||(24924960-24925039)
chr4 (403-511)||(26654333-26654441)
chr4 (557-632)||(16647147-16647221)
chr4 (437-496)||(16674905-16674964)
chr4 (445-514)||(24476117-24476186)
chr4 (556-656)||(12568226-12568327)
chr4 (576-636)||(16928543-16928602)
chr4 (395-473)||(5357768-5357849)
chr4 (448-493)||(4697284-4697329)
[»] scaffold1024 (1 HSPs)
scaffold1024 (557-739)||(2783-2964)
[»] scaffold0039 (3 HSPs)
scaffold0039 (436-540)||(33431-33540)
scaffold0039 (556-636)||(51570-51649)
scaffold0039 (395-482)||(51870-51958)
[»] scaffold0003 (1 HSPs)
scaffold0003 (395-514)||(89532-89651)
[»] scaffold0167 (2 HSPs)
scaffold0167 (576-657)||(10195-10276)
scaffold0167 (405-509)||(731-835)
[»] scaffold0148 (1 HSPs)
scaffold0148 (395-514)||(22768-22888)
[»] scaffold0320 (1 HSPs)
scaffold0320 (576-657)||(6508-6589)
[»] scaffold0337 (1 HSPs)
scaffold0337 (395-479)||(4321-4406)
[»] scaffold0002 (1 HSPs)
scaffold0002 (394-479)||(376452-376539)
[»] scaffold0142 (1 HSPs)
scaffold0142 (396-482)||(20315-20402)
[»] scaffold0346 (1 HSPs)
scaffold0346 (403-496)||(12367-12461)
[»] scaffold0040 (1 HSPs)
scaffold0040 (556-636)||(26842-26923)
[»] scaffold0608 (1 HSPs)
scaffold0608 (447-496)||(5898-5947)
[»] scaffold0065 (1 HSPs)
scaffold0065 (430-479)||(15101-15150)
[»] scaffold0024 (2 HSPs)
scaffold0024 (576-649)||(38816-38887)
scaffold0024 (405-481)||(39168-39245)
[»] scaffold1102 (1 HSPs)
scaffold1102 (430-482)||(1172-1224)


Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 7 - 552
Target Start/End: Complemental strand, 19710212 - 19709667
Alignment:
Q  7 agagtcattacaataacaactatttatctattgaagacaagtcaaagtctcaaatgcaagttgatattgatcctatgaaggctgttgatgcaatatatac 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19710212 agagtcattacaataacaactatttatctattgaagacaagtcaaagtctcaaatgcaagttgatattgatcctatgaaggctgttgatgcaatgtatac 19710113  T
Q  107 tgaagttgctgactgcaattttgtcgaagccatcataggtgttgtcgaaacctatctgttgaagcaaatgatgatgttgctgaatgtcaggtggtggagg 206  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19710112 tgaagttgctgactgcaattttgtcgaagccataataggtgttgtcgaaacctatctgttgaagcaaatgatgatgttgctgaatgtcaggtggtggagg 19710013  T
Q  207 ctactgaaggcccaaagctgataatgaagtcatcactgaatcccagtttgccgaaaaaatgaaagggcttatcctgtggcttaggaggagttgattcact 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19710012 ctactgaaggcccaaagctgataatgaagtcatcactgaatcccagtttgccgaaaaaatgaaagggcttatcctatggcttaggaggagttgattcact 19709913  T
Q  307 ttctaaatcgttgtagactnnnnnnnttctaaggtcatgttgtgccccaggtgaagttctcttttcaacaaagaggcaactaagggcctgtttatcggtg 406  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19709912 ttctaaatcgttgtagactaaaaaaattctaaggtcatgttgtgccccaggtgaagttctcttttcaacaaagaggcaactaagggcctgtttaccggtg 19709813  T
Q  407 tttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaat 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19709812 tttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttttcagaaagtgcgtgaat 19709713  T
Q  507 gttcatcaataggtttctttatgaagaagacgaagttttgtacgaa 552  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  19709712 gttcatcaataggtttctttatgaagaagatgaagttttgtacgaa 19709667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 556 - 739
Target Start/End: Complemental strand, 19709503 - 19709321
Alignment:
Q  556 cggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatgaaaaagctaac 655  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19709503 cggtactttaagtgctagaattctataagtgatttgccacctattttttcatatgaaaaactaccatttatacatagtaaatataaatgaaaaagctaac 19709404  T
Q  656 tggcacgatctgcactcctttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaat 739  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19709403 tgccacgatctgcactcc-ttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaat 19709321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 395 - 514
Target Start/End: Complemental strand, 22450401 - 22450282
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| ||||||||||||||||||| | | ||| ||||||||||| |||||| ||||||||||||||||||  |||||||| ||||||||||||||| |    
T  22450401 tgtttaccggtgtttttggtaaacaaaaggactagttttgattattacaagcaagatcaaaccataaatcctgtgacatgttatgcaatctttttccaaa 22450302  T
Q  495 aagtgcgtgaatgttcatca 514  Q
    || ||  ||||| |||||||    
T  22450301 aattgtatgaatcttcatca 22450282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 18847191 - 18847309
Alignment:
Q  393 cctgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttcca 492  Q
    |||||||| ||||||||||||  ||||||| | ||| ||||||||||| |||| |||||||||| | |||||||| ||||||||||||||||||||||||    
T  18847191 cctgtttaccggtgtttttggcgaacaagaggactagttttgattattacaagaaggatcaaactagaaatcctatgacatgttgtgcaatctttttcca 18847290  T
Q  493 gaaagtgcgtgaatgttca 511  Q
     ||| | | ||||||||||    
T  18847291 aaaaatacatgaatgttca 18847309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 408 - 548
Target Start/End: Complemental strand, 41652324 - 41652182
Alignment:
Q  408 ttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatg 507  Q
    |||| |||||||| ||| ||| ||||||||||| ||||||||||||||||| ||||| || ||||  |||||||||||||||| |||||||| | |||||    
T  41652324 ttttcgtaaacaacaagactagttttgattattacaagcaggatcaaaccagaaatcatatgaca--ttgtgcaatctttttcaagaaagtgtg-gaatg 41652228  T
Q  508 ttcatca-----ataggtttctttatgaagaagacgaagttttgta 548  Q
    |||||||     ||||||| ||||||||| ||||||||||| ||||    
T  41652227 ttcatcatattcataggttgctttatgaacaagacgaagttgtgta 41652182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 442 - 514
Target Start/End: Complemental strand, 22455399 - 22455327
Alignment:
Q  442 caagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||    
T  22455399 caagcaggatcaaaccagaaatcctaggatatgttgtgcaatctttttccaaaaagtacatgaatgttcatca 22455327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 395 - 515
Target Start/End: Complemental strand, 24681131 - 24681008
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca--atctttttcc 491  Q
    |||||| |||||||||||| ||||||||||  ||  ||||||||||| ||||||| ||||||||| |||||||| ||||||||||| |   | |||||||    
T  24681131 tgtttaccggtgtttttggaaaacaagaagggctggttttgattattacaagcagaatcaaaccagaaatcctatgacatgttgtgaattttttttttcc 24681032  T
Q  492 agaaagtgcgtgaatgttcatcaa 515  Q
    |||||  | |||||||||||||||    
T  24681031 agaaaaagagtgaatgttcatcaa 24681008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 15341242 - 15341133
Alignment:
Q  405 tgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtga 504  Q
    ||||||||||||||||     ||| ||||||| ||| |||| |||||||||||| |||||||| ||||| |||||||||| ||||||||||| | | |||    
T  15341242 tgtttttggtaaacaactgagctagttttgataattacaagtaggatcaaaccaaaaatcctatgacatattgtgcaatcattttccagaaaatacatga 15341143  T
Q  505 atgttcatca 514  Q
     |||||||||    
T  15341142 gtgttcatca 15341133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 15430307 - 15430198
Alignment:
Q  405 tgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtga 504  Q
    ||||||||||||||||     ||| ||||||| ||| |||| |||||||||||| |||||||| ||||| |||||||||| ||||||||||| | | |||    
T  15430307 tgtttttggtaaacaactgagctagttttgataattacaagtaggatcaaaccaaaaatcctatgacatattgtgcaatcattttccagaaaatacatga 15430208  T
Q  505 atgttcatca 514  Q
     |||||||||    
T  15430207 gtgttcatca 15430198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 15521611 - 15521502
Alignment:
Q  405 tgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtga 504  Q
    ||||||||||||||||     ||| ||||||| ||| |||| |||||||||||| |||||||| ||||| |||||||||| ||||||||||| | | |||    
T  15521611 tgtttttggtaaacaactgagctagttttgataattacaagtaggatcaaaccaaaaatcctatgacatattgtgcaatcattttccagaaaatacatga 15521512  T
Q  505 atgttcatca 514  Q
     |||||||||    
T  15521511 gtgttcatca 15521502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 557 - 641
Target Start/End: Complemental strand, 22454719 - 22454636
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataa 641  Q
    |||||||  ||||||||||||||||||||||||||| ||| |||||| | ||||||||||||| || ||||||||| ||| ||||    
T  22454719 ggtactttgagtgctagaattctataagtgatttgcgacccattttt-cttatgaaaaactactatatatacataggaaaaataa 22454636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 557 - 648
Target Start/End: Original strand, 5892690 - 5892780
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatgaaaa 648  Q
    |||||||| |||||||||||||||||| |||||||  |||  ||||| ||||||||||||||| || |||||||||| || |||| ||||||    
T  5892690 ggtacttcgagtgctagaattctataaatgatttgtgacccgttttt-catatgaaaaactactatatatacatagtgaaaataactgaaaa 5892780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 395 - 481
Target Start/End: Complemental strand, 12669162 - 12669075
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    |||||| ||||||||||||||||||| | |  ||  ||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||    
T  12669162 tgtttaccggtgtttttggtaaacaatacgggctggttttgattattacaagcaggatcaaaccagaaatcatagaacatgttgtgca 12669075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 397 - 482
Target Start/End: Original strand, 13109969 - 13110055
Alignment:
Q  397 tttatcggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaa 482  Q
    |||| ||||||||||| ||||||| |||  || |||||| ||||| |||| || ||||||||| |||||||||||||||||||||||    
T  13109969 tttaccggtgtttttgataaacaataagggctgattttggttattacaagtagcatcaaaccagaaatcctaggacatgttgtgcaa 13110055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 396 - 489
Target Start/End: Complemental strand, 22713992 - 22713898
Alignment:
Q  396 gtttatcggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttt 489  Q
    ||||| |||||||||||| ||||||||||  ||  |||| |||||| ||||||||||||||||| ||| ||||| |||||||||| ||| |||||    
T  22713992 gtttaccggtgtttttggcaaacaagaagggctggtttttattattacaagcaggatcaaaccagaaaccctagaacatgttgtgaaatgttttt 22713898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 481
Target Start/End: Complemental strand, 26136460 - 26136371
Alignment:
Q  394 ctgtttatcggtgtttttggtaaacaagaagc--ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    |||| ||||||||||||||||||||||  | |  || |||||||||||  ||||||||| ||||||| | ||||||||||||||||||||    
T  26136460 ctgtatatcggtgtttttggtaaacaaataccgactgattttgattataacaagcaggaccaaaccagagatcctaggacatgttgtgca 26136371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 492
Target Start/End: Original strand, 23355264 - 23355352
Alignment:
Q  405 tgtttttggtaaacaagaagcc-taattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttcca 492  Q
    ||||||||||||||||||||   | |||||||||||| |||||||||||||| || ||||| |||||||| ||| ||||  ||||||||    
T  23355264 tgtttttggtaaacaagaagggatgattttgattattacaagcaggatcaaatcagaaatcttaggacattttgcgcaaagtttttcca 23355352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 443 - 490
Target Start/End: Original strand, 32351991 - 32352038
Alignment:
Q  443 aagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttc 490  Q
    |||||||||||||||| ||||||||||||||||||||  |||||||||    
T  32351991 aagcaggatcaaaccagaaatcctaggacatgttgtgacatctttttc 32352038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 443 - 490
Target Start/End: Original strand, 32368652 - 32368699
Alignment:
Q  443 aagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttc 490  Q
    |||||||||||||||| ||||||||||||||||||||  |||||||||    
T  32368652 aagcaggatcaaaccagaaatcctaggacatgttgtgacatctttttc 32368699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 628
Target Start/End: Complemental strand, 15340914 - 15340853
Alignment:
Q  566 agtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatac 628  Q
    |||||||||||||||||| |||||||| ||| |||||| ||||||||||||||  ||||||||    
T  15340914 agtgctagaattctataaatgatttgcgaccaattttt-catatgaaaaactattatttatac 15340853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 628
Target Start/End: Complemental strand, 15429979 - 15429918
Alignment:
Q  566 agtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatac 628  Q
    |||||||||||||||||| |||||||| ||| |||||| ||||||||||||||  ||||||||    
T  15429979 agtgctagaattctataaatgatttgcgaccaattttt-catatgaaaaactattatttatac 15429918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 628
Target Start/End: Complemental strand, 15521283 - 15521222
Alignment:
Q  566 agtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatac 628  Q
    |||||||||||||||||| |||||||| ||| |||||| ||||||||||||||  ||||||||    
T  15521283 agtgctagaattctataaatgatttgcgaccaattttt-catatgaaaaactattatttatac 15521222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 434 - 492
Target Start/End: Original strand, 25094872 - 25094930
Alignment:
Q  434 gattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttcca 492  Q
    ||||||| ||||||||||||||||| |||| ||||| ||||||||||||  ||||||||    
T  25094872 gattattacaagcaggatcaaaccagaaattctagggcatgttgtgcaaagtttttcca 25094930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 615
Target Start/End: Complemental strand, 28291572 - 28291514
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaa 615  Q
    |||||||| ||||||||||||||||||||||||||| |||  ||||| | |||||||||    
T  28291572 ggtacttcgagtgctagaattctataagtgatttgcgaccatttttttcgtatgaaaaa 28291514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 631
Target Start/End: Original strand, 32352277 - 32352350
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacata 631  Q
    |||||||| ||||||| ||||||||||||||||||| |||  ||||| | ||||||||||||| || ||||||||    
T  32352277 ggtacttcgagtgctataattctataagtgatttgcgacccgttttt-cttatgaaaaactactatatatacata 32352350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 631
Target Start/End: Original strand, 32368938 - 32369011
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacata 631  Q
    |||||||| ||||||| ||||||||||||||||||| |||  ||||| | ||||||||||||| || ||||||||    
T  32368938 ggtacttcgagtgctataattctataagtgatttgcgacccgttttt-cttatgaaaaactactatatatacata 32369011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 22450033 - 22449988
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttt 602  Q
    |||||||| ||||||||||||||||||||||||||| |||| ||||    
T  22450033 ggtacttcgagtgctagaattctataagtgatttgcgacctttttt 22449988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 404 - 475
Target Start/End: Complemental strand, 9286713 - 9286641
Alignment:
Q  404 gtgtttttggtaaacaagaagccta-attttgattattgcaagcaggatcaaaccataaatcctaggacatgt 475  Q
    ||||||||||||||||| |||  |  ||||||||||||||||||| |||||||||| |||| ||| |||||||    
T  9286713 gtgtttttggtaaacaataagggttgattttgattattgcaagcaagatcaaaccagaaattctaagacatgt 9286641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 628
Target Start/End: Original strand, 6017637 - 6017707
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatac 628  Q
    |||||||| |||||||||||||||||| | |||||| || | ||||||| ||||||||||||  ||||||||    
T  6017637 ggtacttcgagtgctagaattctataaataatttgcgacatgtttttcc-tatgaaaaactattatttatac 6017707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 476
Target Start/End: Complemental strand, 11647654 - 11647572
Alignment:
Q  394 ctgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgtt 476  Q
    ||||||| ||||||| ||||||||||||||| ||||| || |   ||||  ||| |||||||| | |||||||||||||||||    
T  11647654 ctgtttaccggtgttcttggtaaacaagaagactaatcttaaaagttgcttgcatgatcaaactagaaatcctaggacatgtt 11647572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 395 - 514
Target Start/End: Complemental strand, 20515886 - 20515767
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| ||||||||||||||||||| ||| ||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  20515886 tgtttaccggtgtttttggtaaacaataagactagttttgattattacaagcaggatcaaaccagaaatcttaggacatgttgtgtaatctttttccaga 20515787  T
Q  495 aagtgcgtgaatgttcatca 514  Q
    |||||  |||||||||||||    
T  20515786 aagtgtatgaatgttcatca 20515767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 557 - 706
Target Start/End: Original strand, 17676659 - 17676806
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatgaaaaa-gctaac 655  Q
    |||||||| ||||||||||||||||||||||||||  ||| ||||| |||||||||||||||| |||||||||||||||| |||| ||||||| ||||||    
T  17676659 ggtacttcgagtgctagaattctataagtgatttgtgacccatttt-ccatatgaaaaactactatttatacatagtaaa-ataactgaaaaaggctaac 17676756  T
Q  656 tggcacgatctgcactcctttccatcgaaaattgtctgtcccccacgtctt 706  Q
    ||  | |||| ||||| | |||||||||||||||  |||||||||||||||    
T  17676757 tgctatgatcagcacttc-ttccatcgaaaattgattgtcccccacgtctt 17676806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 556 - 706
Target Start/End: Complemental strand, 15438049 - 15437899
Alignment:
Q  556 cggtacttcaagtgctagaatt-ctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatg-aaaaagcta 653  Q
    ||||||||| |||||||||||| |||| |||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||| || |||||||||    
T  15438049 cggtacttcgagtgctagaatttctattagtgatttgcgacctatttttc-atatgaaaaactacaatttatacatagtaaaaataactgaaaaaagcta 15437951  T
Q  654 actggcacgatctgcactcctttccatcgaaaattgtctgtcccccacgtctt 706  Q
    |||| ||||| |  |||||| ||||| |||||| ||  ||| |||||||||||    
T  15437950 actgccacgaacaacactcc-ttccaccgaaaactgcttgttccccacgtctt 15437899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 430 - 514
Target Start/End: Complemental strand, 17162305 - 17162221
Alignment:
Q  430 ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| | | |||||||||||||    
T  17162305 ttttgattattacaagcaggatcaaaccagaaatcctatgacatgttgtgcaatctttttccataaaatacatgaatgttcatca 17162221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 403 - 489
Target Start/End: Original strand, 23388904 - 23388989
Alignment:
Q  403 ggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttt 489  Q
    |||||||||| ||| ||||||| ||| ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  23388904 ggtgtttttgttaa-caagaagactagttttgattattacaagcatgatcaaaccagaaatcctaggacatgttgtgcaatcttttt 23388989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 556 - 665
Target Start/End: Original strand, 32890489 - 32890597
Alignment:
Q  556 cggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatgaaaaa-gctaa 654  Q
    ||||||||| |||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||| |||| ||||||| |||||    
T  32890489 cggtacttcgagtgctagaattttataagtgatttgcgaccta-ttttcgatatggaaaactactatttatacatagtaaa-ataattgaaaaaggctaa 32890586  T
Q  655 ctggcacgatc 665  Q
    ||| |||||||    
T  32890587 ctgccacgatc 32890597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 397 - 514
Target Start/End: Original strand, 13370143 - 13370260
Alignment:
Q  397 tttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaa 496  Q
    ||||| ||| |||||| ||||||| ||  |||||||| |||||| |||||||||||||| || |||| |||| ||||||||||||||||||||||| |||    
T  13370143 tttattggtatttttgttaaacaataatactaattttaattattacaagcaggatcaaatcagaaattctagaacatgttgtgcaatctttttccaaaaa 13370242  T
Q  497 gtgcgtgaatgttcatca 514  Q
     |  ||||||||||||||    
T  13370243 atatgtgaatgttcatca 13370260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 559 - 636
Target Start/End: Complemental strand, 21498124 - 21498048
Alignment:
Q  559 tacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaa 636  Q
    ||||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||| ||||||||||||||||    
T  21498124 tacttcaagtgctagaattctataaatgatttgcgacctatttct-catatgaaaaactactatttatacatagtaaa 21498048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 556 - 703
Target Start/End: Original strand, 2482114 - 2482258
Alignment:
Q  556 cggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatgaaaaagctaac 655  Q
    ||||||||| ||||||||||||||||||||||||||| ||| ||||||| | |||||||||| | ||||||| ||||| || || | |||||||||||||    
T  2482114 cggtacttcgagtgctagaattctataagtgatttgcgacccatttttcga-atgaaaaacttctatttataaatagt-aagatgactgaaaaagctaac 2482211  T
Q  656 tggcacgatctgcactcctttccatcgaaaattgtctgtcccccacgt 703  Q
    || ||||| |  |||| |||| ||||||||| ||  ||||||||||||    
T  2482212 tgccacgaacaacacttcttt-catcgaaaactgcttgtcccccacgt 2482258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 394 - 511
Target Start/End: Complemental strand, 21498441 - 21498324
Alignment:
Q  394 ctgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccag 493  Q
    ||||||| |||||||||||||||||||| || |||  |||||||||| |||||| | |||||| | |||||||| || |||||||||||| || ||| ||    
T  21498441 ctgtttaccggtgtttttggtaaacaagcagactagctttgattattacaagcacggtcaaactagaaatcctatgatatgttgtgcaatgttattctag 21498342  T
Q  494 aaagtgcgtgaatgttca 511  Q
    ||||||  ||||||||||    
T  21498341 aaagtgtatgaatgttca 21498324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 403 - 514
Target Start/End: Original strand, 17636491 - 17636602
Alignment:
Q  403 ggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcg 501  Q
    ||||||||||||||||||||||  || |||| | ||||| ||||||||||||||||| ||||||||||| || ||||||||  ||||| ||||||||| |    
T  17636491 ggtgtttttggtaaacaagaagggctgatttgg-ttattacaagcaggatcaaaccagaaatcctaggatatattgtgcaaagttttttcagaaagtgag 17636589  T
Q  502 tgaatgttcatca 514  Q
    ||| |||||||||    
T  17636590 tgagtgttcatca 17636602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 405 - 514
Target Start/End: Original strand, 17676351 - 17676460
Alignment:
Q  405 tgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtg 503  Q
    ||||||||||||||||||||  || |||| | ||||| ||||||||||||||||| ||||||||||| || ||||||||  ||||| ||||||||| |||    
T  17676351 tgtttttggtaaacaagaagggctgatttgg-ttattacaagcaggatcaaaccagaaatcctaggatatattgtgcaaagttttttcagaaagtgagtg 17676449  T
Q  504 aatgttcatca 514  Q
    | |||||||||    
T  17676450 agtgttcatca 17676460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 430 - 515
Target Start/End: Complemental strand, 29891613 - 29891528
Alignment:
Q  430 ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatcaa 515  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||  ||| |||||||| |  ||||| |||||||||    
T  29891613 ttttggttattacaagcaggatcaaaccataaatcctaggacatgttgtgaaaagtttctccagaaaattagtgaacgttcatcaa 29891528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 395 - 490
Target Start/End: Complemental strand, 25520766 - 25520670
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaa-ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttc 490  Q
    |||||| ||||||||||||||||||| |||  ||  ||||| ||||| ||||||||||||||||  |||||||||||||||||||||| | ||||||    
T  25520766 tgtttaccggtgtttttggtaaacaacaagggtaggttttggttattacaagcaggatcaaacccaaaatcctaggacatgttgtgcattgtttttc 25520670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 395 - 482
Target Start/End: Original strand, 32890172 - 32890260
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagccta-attttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaa 482  Q
    |||||| |||||||||||||||| ||||||  |  |||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  32890172 tgtttaccggtgtttttggtaaataagaagggttgattttggttattacaagcagaatcaaaccataaatcctaagacatgttgtgcaa 32890260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 600 - 706
Target Start/End: Original strand, 17637947 - 17638052
Alignment:
Q  600 ttttccatatgaaaaactaccatttatacatagtaaatataaatgaaaaa-gctaactggcacgatctgcactcctttccatcgaaaattgtctgtcccc 698  Q
    |||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||  | | || | ||| | |||||||||||||||  |||||||    
T  17637947 ttttccatatgaaaaactactatttatacatagtaaa-ataactgaaaaaggctaactgctatgttcagaacttc-ttccatcgaaaattgattgtcccc 17638044  T
Q  699 cacgtctt 706  Q
    ||||||||    
T  17638045 cacgtctt 17638052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 394 - 496
Target Start/End: Complemental strand, 31404430 - 31404327
Alignment:
Q  394 ctgtttatcggtgtttttggtaaacaagaagccta-attttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttcca 492  Q
    ||||||| | |||||||||||||||||||||  |  |||||   |||| ||||||||| ||||||| |||||||||||||||||||||||  ||| ||||    
T  31404430 ctgtttaccagtgtttttggtaaacaagaagggttgatttttgctattacaagcaggaccaaaccaaaaatcctaggacatgttgtgcaaagtttatcca 31404331  T
Q  493 gaaa 496  Q
    ||||    
T  31404330 gaaa 31404327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 19011875 - 19011944
Alignment:
Q  445 gcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    |||||||||||  | |||||||||||||| ||||||||| |||||||||||| ||  |||||||||||||    
T  19011875 gcaggatcaaattagaaatcctaggacatattgtgcaatatttttccagaaattgtttgaatgttcatca 19011944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 402 - 489
Target Start/End: Complemental strand, 16467634 - 16467547
Alignment:
Q  402 cggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttt 489  Q
    ||||||||||| ||||||| ||| ||| | || |||||| |||||  |||||||||| ||||| |||||||| ||||||||| |||||    
T  16467634 cggtgtttttgataaacaataagactagtgtttattattacaagcgagatcaaaccagaaatcataggacatattgtgcaatattttt 16467547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 481
Target Start/End: Original strand, 18929092 - 18929180
Alignment:
Q  394 ctgtttatcggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    ||||||| || |||||||||||||||| | |  ||  ||||||||||| | ||||||| ||||||| | ||||||||||||||||||||    
T  18929092 ctgtttagcgatgtttttggtaaacaatacgggctggttttgattattacgagcaggaccaaaccagagatcctaggacatgttgtgca 18929180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 450 - 514
Target Start/End: Complemental strand, 31000184 - 31000120
Alignment:
Q  450 atcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    ||||||| | |||||||||| ||||||||||| | |||||||||||| ||  |||||||||||||    
T  31000184 atcaaactagaaatcctagggcatgttgtgcagtatttttccagaaaatggttgaatgttcatca 31000120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 515
Target Start/End: Complemental strand, 15438344 - 15438259
Alignment:
Q  431 tttgattattgcaagcaggatcaaaccataaa-tcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatcaa 515  Q
    |||||||||  |||||||||| |||| | ||| || || ||||||||||||||||||||| |||||| ||  |||||||| |||||    
T  15438344 tttgattatcacaagcaggataaaactagaaaatcatatgacatgttgtgcaatcttttttcagaaaatgtatgaatgttaatcaa 15438259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 9e-35; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 395 - 514
Target Start/End: Complemental strand, 4031376 - 4031257
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| |||||||||||||||||||||||  |||||||||||| | |||||| |||||||||| ||||||||| ||||||||||||||||||||| |||    
T  4031376 tgtttaccggtgtttttggtaaacaagaagaataattttgattactacaagcatgatcaaaccagaaatcctagaacatgttgtgcaatctttttctaga 4031277  T
Q  495 aagtgcgtgaatgttcatca 514  Q
    ||||||  ||||||||||||    
T  4031276 aagtgctcgaatgttcatca 4031257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 611 - 739
Target Start/End: Complemental strand, 4030139 - 4030011
Alignment:
Q  611 aaaaactaccatttatacatagtaaatataaatgaaaaagctaactggcacgatctgcactcctttccatcgaaaattgtctgtcccccacgtctttaat 710  Q
    ||||||||| |||||||||||||||| || | ||||||||||||||| ||||||||||||||| | | |||||||||||||||||| ||||||||| |||    
T  4030139 aaaaactactatttatacatagtaaaaatgactgaaaaagctaactgccacgatctgcactcc-tacaatcgaaaattgtctgtccaccacgtcttcaat 4030041  T
Q  711 gggaaaactgctgc-tttttgaattcaaat 739  Q
    |||||||||| ||| |||||||||||||||    
T  4030040 gggaaaactgttgcttttttgaattcaaat 4030011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 395 - 548
Target Start/End: Complemental strand, 242373 - 242216
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| ||| ||||||||||||||| | |  | |||||| ||||| |||||| |||||||||| || ||||||||||||||||||||| ||||||||||    
T  242373 tgtttaccggcgtttttggtaaacaacagggttgattttggttattacaagcaagatcaaaccagaa-tcctaggacatgttgtgcaatatttttccaga 242275  T
Q  495 aagtgcgtgaatgttcatca-----ataggtttctttatgaagaagacgaagttttgta 548  Q
    |||||| |||||||||||||     ||||||| ||||||||| | || |||||||||||    
T  242274 aagtgcttgaatgttcatcatattcataggttactttatgaacatgaagaagttttgta 242216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 395 - 512
Target Start/End: Original strand, 28712143 - 28712259
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| |||||||||||||||||||  || ||| ||| ||||||| || ||| |||||||||| ||||||||||||||||||||||||||||||||| |    
T  28712143 tgtttaccggtgtttttggtaaacaacgagactagttt-gattattacaggcaagatcaaaccagaaatcctaggacatgttgtgcaatctttttccata 28712241  T
Q  495 aagtgcgtgaatgttcat 512  Q
    |||||  |||||||||||    
T  28712242 aagtgtatgaatgttcat 28712259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 557 - 657
Target Start/End: Complemental strand, 242044 - 241944
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagctaac 655  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |||| ||| |||| | ||||||||||||    
T  242044 ggtacttcgagtgctagaattctataagtgatttgcgacctattttt-catatgaaaaactactatttatagatagcaaaaataactagaaaaagctaac 241946  T
Q  656 tg 657  Q
    ||    
T  241945 tg 241944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 10163582 - 10163473
Alignment:
Q  405 tgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtga 504  Q
    ||||||||||||| |||||| ||| ||||||||||| ||||||||||||||||| |||| ||| || |||||||||||||| |||||||||| | | |||    
T  10163582 tgtttttggtaaaaaagaagactagttttgattattacaagcaggatcaaaccagaaattctaagatatgttgtgcaatctgtttccagaaaattcatga 10163483  T
Q  505 atgttcatca 514  Q
     |||||||||    
T  10163482 gtgttcatca 10163473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 430 - 514
Target Start/End: Complemental strand, 24154463 - 24154379
Alignment:
Q  430 ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||| |||||||||    
T  24154463 ttttgattattacaagtaggatcaaaccataaatcctaggacttgttgtgcaatctttttccagaaaattcatgagtgttcatca 24154379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 397 - 514
Target Start/End: Original strand, 34992124 - 34992240
Alignment:
Q  397 tttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaa 496  Q
    |||||||||||||||||||||||| | | ||| |||| |||||| |||||||||||||| || ||||||||||| || ||||||||| |||||||| |||    
T  34992124 tttatcggtgtttttggtaaacaacatgactagttttaattattacaagcaggatcaaatcagaaatcctagga-atattgtgcaatatttttccataaa 34992222  T
Q  497 gtgcgtgaatgttcatca 514  Q
     | | |||||||||||||    
T  34992223 atacatgaatgttcatca 34992240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 395 - 496
Target Start/End: Complemental strand, 13003161 - 13003060
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| ||||| ||||||||||| | | | ||| ||||||||||| ||||||| ||||||||| ||||| |||||| ||||||||||||||||| ||||    
T  13003161 tgtttaccggtgattttggtaaactacagggctagttttgattattacaagcagaatcaaaccagaaatcttaggacctgttgtgcaatcttttttcaga 13003062  T
Q  495 aa 496  Q
    ||    
T  13003061 aa 13003060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 395 - 514
Target Start/End: Original strand, 16142319 - 16142439
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccag 493  Q
    |||||| ||||||||||||||||||| |||  ||  ||||| ||||| ||| || |||||||| | |||||||||||||||||||||||  |||||||||    
T  16142319 tgtttaccggtgtttttggtaaacaataagggctggttttggttattacaaacatgatcaaactagaaatcctaggacatgttgtgcaaagtttttccag 16142418  T
Q  494 aaagtgcgtgaatgttcatca 514  Q
    |||||| |||| || ||||||    
T  16142419 aaagtgagtgagtggtcatca 16142439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 397 - 495
Target Start/End: Complemental strand, 17296544 - 17296445
Alignment:
Q  397 tttatcggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaa 495  Q
    ||||||||||||||||||||||||||||  ||| ||||| ||||| ||| ||||||||||| | ||||||||  |||||||||||||  |||||||||||    
T  17296544 tttatcggtgtttttggtaaacaagaaggtctagttttggttattacaatcaggatcaaacaagaaatcctacaacatgttgtgcaaattttttccagaa 17296445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 402 - 481
Target Start/End: Complemental strand, 14767171 - 14767091
Alignment:
Q  402 cggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    ||||||||||||||||||| |||  ||| ||||||||||| |||||| |||||||||| |||| |||||||||||||||||    
T  14767171 cggtgtttttggtaaacaataagggctagttttgattattacaagcacgatcaaaccagaaattctaggacatgttgtgca 14767091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 395 - 548
Target Start/End: Complemental strand, 1469591 - 1469435
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| |||||||||||||||||   ||| |||  |||||||||| |||||| |||||||| | ||||| ||| |||| ||||| ||| |||||  |||    
T  1469591 tgtttaccggtgtttttggtaaacgccaagtctagctttgattattacaagcatgatcaaactagaaatcttagaacatattgtgaaatgtttttgtaga 1469492  T
Q  495 aagtgcgtgaatgttcatcaa---taggtttctttatgaagaagacgaagttttgta 548  Q
    || ||  ||||||||||||||    ||||| ||||||||| |||| |||||||||||    
T  1469491 aaatgtatgaatgttcatcaagttcaggttgctttatgaacaagatgaagttttgta 1469435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 6038781 - 6038850
Alignment:
Q  445 gcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    |||||||||||| | ||||||||||  || |||||||||||||||||||||| ||| |||||||||||||    
T  6038781 gcaggatcaaactagaaatcctagggaatattgtgcaatctttttccagaaaatgcttgaatgttcatca 6038850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 559 - 631
Target Start/End: Original strand, 28712471 - 28712542
Alignment:
Q  559 tacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacata 631  Q
    |||||| ||||||||||||||||||||||||||| || | ||||| | |||||||||||| ||||||||||||    
T  28712471 tacttcgagtgctagaattctataagtgatttgcgacatgttttt-cttatgaaaaactatcatttatacata 28712542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 18713496 - 18713579
Alignment:
Q  407 tttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttt 489  Q
    ||||||||||||||||||  ||  ||||||||||| |||||| |||||||||| ||||||| |||||||||| ||||| |||||    
T  18713496 tttttggtaaacaagaagggctggttttgattattacaagcaagatcaaaccagaaatccttggacatgttgcgcaatgttttt 18713579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 650
Target Start/End: Original strand, 16142637 - 16142731
Alignment:
Q  556 cggtacttcaagtgct-agaatt-ctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatgaaaaag 650  Q
    ||||||||| |||||| |||||| |||||| |||||||| ||| ||||| ||||||| |||||||| |||||||||||||||| |||| ||||||||    
T  16142637 cggtacttcgagtgcttagaatttctataaatgatttgcgacccatttt-ccatatggaaaactactatttatacatagtaaa-ataactgaaaaag 16142731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 632
Target Start/End: Complemental strand, 24154170 - 24154095
Alignment:
Q  556 cggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatag 632  Q
    ||||||||| ||||||||||||||| || |||||||| |||| ||||||| ||| ||||||||  ||||||||||||    
T  24154170 cggtacttcgagtgctagaattctacaaatgatttgcgacctgtttttcc-tataaaaaactattatttatacatag 24154095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 633
Target Start/End: Complemental strand, 13002847 - 13002771
Alignment:
Q  556 cggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagt 633  Q
    ||||||||| |||||||||||||||||| |||||||| |    ||||||| ||||||||||||  |||||||||||||    
T  13002847 cggtacttcgagtgctagaattctataaatgatttgctattcgtttttcc-tatgaaaaactattatttatacatagt 13002771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 636
Target Start/End: Original strand, 16793397 - 16793456
Alignment:
Q  576 ttctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaa 636  Q
    |||| |||||||||||| || |||||| ||||||| |||||||| ||||||||||||||||    
T  16793397 ttctttaagtgatttgcgacttatttt-ccatatggaaaactactatttatacatagtaaa 16793456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 450 - 496
Target Start/End: Original strand, 9404563 - 9404609
Alignment:
Q  450 atcaaaccataaatcctaggacatgttgtgcaatctttttccagaaa 496  Q
    ||||||||| ||||| |||||||||||||||||  ||||||||||||    
T  9404563 atcaaaccagaaatcgtaggacatgttgtgcaaagtttttccagaaa 9404609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 649
Target Start/End: Original strand, 16142966 - 16143034
Alignment:
Q  579 tataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatgaaaaa 649  Q
    ||||| |||||||| ||| ||||| ||||||| |||||||| |||||||||||||||| |||| |||||||    
T  16142966 tataaatgatttgcgacccatttt-ccatatggaaaactactatttatacatagtaaa-ataactgaaaaa 16143034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 431 - 489
Target Start/End: Complemental strand, 23073218 - 23073160
Alignment:
Q  431 tttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttt 489  Q
    |||||||||| |||||| || || |||||||||  ||| ||||||||||||||||||||    
T  23073218 tttgattattacaagcaagaccagaccataaattttagaacatgttgtgcaatcttttt 23073160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 6e-33; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 402 - 514
Target Start/End: Complemental strand, 28619577 - 28619465
Alignment:
Q  402 cggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcg 501  Q
    ||||||||||||| ||||||||| ||| |||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| || |    
T  28619577 cggtgtttttggtgaacaagaagactagttttaattattacaagcaggatcaaaccagaaatcataggacatgttgtgcaatccttttccagaaaatgtg 28619478  T
Q  502 tgaatgttcatca 514  Q
    |||||||||||||    
T  28619477 tgaatgttcatca 28619465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 10235823 - 10235933
Alignment:
Q  404 gtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtg 503  Q
    ||||||||||||||||| ||| ||| ||||||||||| |||||| |||||||||| |||| |||||||||||||||||||||||||||| ||| | | ||    
T  10235823 gtgtttttggtaaacaataagactagttttgattattacaagcatgatcaaaccagaaattctaggacatgttgtgcaatctttttccaaaaaatacatg 10235922  T
Q  504 aatgttcatca 514  Q
    |||||||||||    
T  10235923 aatgttcatca 10235933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 433 - 552
Target Start/End: Original strand, 22987533 - 22987657
Alignment:
Q  433 tgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca-----ataggtttcttta 527  Q
    |||||||  ||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||| ||||||||||||||     ||||||| |||||    
T  22987533 tgattataacaagcaggatcaaactagaaatcatatgacatgttgtgcaatctttttccagaaagtgtgtgaatgttcatcatattcataggttgcttta 22987632  T
Q  528 tgaagaagacgaagttttgtacgaa 552  Q
    | || |||| |||||||||||||||    
T  22987633 taaacaagatgaagttttgtacgaa 22987657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 395 - 543
Target Start/End: Complemental strand, 24364509 - 24364354
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttcc--a 492  Q
    |||||| |||| |||||||||||||||||  ||| ||||||||||| |||||||||||||||||  |||||||| ||||||| |||||||||||| |  |    
T  24364509 tgtttaccggtatttttggtaaacaagaaaactagttttgattattacaagcaggatcaaaccaggaatcctagaacatgttctgcaatcttttttccaa 24364410  T
Q  493 gaaagtgcgtgaatgttcatca-----ataggtttctttatgaagaagacgaagtt 543  Q
     ||| || ||||| ||||||||     ||||||| ||||||||| |||||||||||    
T  24364409 aaaaatgtgtgaacgttcatcatattcataggttgctttatgaacaagacgaagtt 24364354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 395 - 540
Target Start/End: Complemental strand, 31533364 - 31533213
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccag 493  Q
    ||||||||||||||||||||||||||||||  ||  ||||| ||||| ||||||||||| ||||  |||||||||||||||||||||||  ||||| |||    
T  31533364 tgtttatcggtgtttttggtaaacaagaagggctggttttggttattacaagcaggatcgaacccgaaatcctaggacatgttgtgcaaagttttttcag 31533265  T
Q  494 aaagtgcgtgaatgttcatca-----ataggtttctttatgaagaagacgaa 540  Q
    ||| || |||| ||||||| |     |||||||| |||||||| ||||||||    
T  31533264 aaattgagtgagtgttcataagattcataggtttatttatgaacaagacgaa 31533213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 395 - 543
Target Start/End: Original strand, 24308816 - 24308972
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaa-tcttttt--cc 491  Q
    |||||| |||| |||||||||||||||||  ||| ||||||||||| |||||||||||||||||  |||||||| ||||||| ||||| |||||||  |     
T  24308816 tgtttaccggtatttttggtaaacaagaaaactagttttgattattacaagcaggatcaaaccaggaatcctagaacatgttctgcaattcttttttcca 24308915  T
Q  492 agaaagtgcgtgaatgttcatca-----ataggtttctttatgaagaagacgaagtt 543  Q
    | ||| || ||||| ||||||||     ||||||| ||||||||| |||||||||||    
T  24308916 aaaaaatgtgtgaacgttcatcatattcataggttgctttatgaacaagacgaagtt 24308972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 557 - 726
Target Start/End: Complemental strand, 28619314 - 28619148
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatg-aaaaagct-aa 654  Q
    |||||||| ||||||||||||||||||||||||||| ||| |||||| | |||||||||||  ||||||||||||| ||| |||| || |||||||| ||    
T  28619314 ggtacttctagtgctagaattctataagtgatttgcgacccattttt-cttatgaaaaact--catttatacatag-aaaaataactgtaaaaagctaaa 28619219  T
Q  655 ctggcacgatctgcactcctttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctt 726  Q
    ||| || || ||||||| | |||||||||||||||  |||||| ||||| || |||  |||||||| |||||    
T  28619218 ctgccatgaactgcacttc-ttccatcgaaaattggttgtccctcacgttttcaataagaaaactgttgctt 28619148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 430 - 514
Target Start/End: Original strand, 9422907 - 9422990
Alignment:
Q  430 ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    ||||||||||| |||||||||||||| || ||||||||||| || |||||||||||||||||| ||| | | |||||||||||||    
T  9422907 ttttgattattacaagcaggatcaaatcagaaatcctagga-atattgtgcaatctttttccataaaatacatgaatgttcatca 9422990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 429 - 481
Target Start/End: Complemental strand, 17167616 - 17167564
Alignment:
Q  429 attttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  17167616 attttgattattacaagcaggataaaaccataaatcctaggacatgttgtgca 17167564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 395 - 490
Target Start/End: Original strand, 24878130 - 24878226
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaa-gcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttc 490  Q
    |||||| |||| ||||||||||||||||| |  |  |||| |||||| |||||||||||||| || |||||||||||||||||||||||| ||||||    
T  24878130 tgtttaccggtatttttggtaaacaagaaaggttggttttaattattacaagcaggatcaaagcagaaatcctaggacatgttgtgcaatgtttttc 24878226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 557 - 728
Target Start/End: Complemental strand, 36499557 - 36499387
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatg-aaaaagctaac 655  Q
    |||||||| |||  |||||||||||||||||||| | ||||||||||  |||||||||||||  ||||||||||||| |  | || || |||||||||||    
T  36499557 ggtacttcgagttttagaattctataagtgatttacgacctattttt-tatatgaaaaactattatttatacatagtgacaacaactgcaaaaagctaac 36499459  T
Q  656 tggcacgatctgcactcctttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttt 728  Q
    || || || ||||||| | |||||||||||| |   ||||||||||||||| |||  |||| |||| ||||||    
T  36499458 tgccatgaactgcacttc-ttccatcgaaaactccatgtcccccacgtcttcaataagaaatctgcggctttt 36499387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 556 - 649
Target Start/End: Complemental strand, 31533043 - 31532949
Alignment:
Q  556 cggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaa---actaccatttatacatagtaaatataaatgaaaaa 649  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||   ||||| ||||||| |||||||| |||| |||||||    
T  31533043 cggtacttcgagtgctagaattctataagtgatttgcgaccta-ttttccatatggaaaagtactactatttatatatagtaaa-ataactgaaaaa 31532949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 557 - 657
Target Start/End: Original strand, 21390754 - 21390854
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagctaac 655  Q
    |||||||| |||||| ||||||||||| | |||||  ||||||||||| |||||||||||||  |||||||||||||||| || ||| ||||||| ||||    
T  21390754 ggtacttcgagtgcttgaattctataaataatttgtgacctatttttc-atatgaaaaactattatttatacatagtaaaaatgaatggaaaaaggtaac 21390852  T
Q  656 tg 657  Q
    ||    
T  21390853 tg 21390854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 405 - 474
Target Start/End: Original strand, 20646250 - 20646319
Alignment:
Q  405 tgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatg 474  Q
    |||||||||||||||| |   ||| ||||||||||| |||||| |||| |||||||||||||||||||||    
T  20646250 tgtttttggtaaacaatagaactagttttgattattacaagcaagatcgaaccataaatcctaggacatg 20646319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 556 - 654
Target Start/End: Original strand, 9423216 - 9423315
Alignment:
Q  556 cggtacttcaagtgctagaattctataagtgatttgccacctatttttccat-atgaaaaactaccatttatacatagtaaatataaatgaaaaagctaa 654  Q
    ||||||||| |||||||||||| ||||| |||||||| |||| ||||| | | |||||||||||  |||||||||||| | | ||||||| |||| ||||    
T  9423216 cggtacttcgagtgctagaattttataaatgatttgcgaccttttttttcttcatgaaaaactattatttatacatagaagaaataaatgcaaaaactaa 9423315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 447 - 514
Target Start/End: Complemental strand, 21166467 - 21166400
Alignment:
Q  447 aggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    |||||||||| | |||| |||||||||||||||||||  ||||||||||| ||  |||||||||||||    
T  21166467 aggatcaaactagaaattctaggacatgttgtgcaatgattttccagaaaatgtatgaatgttcatca 21166400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 206
Target Start/End: Complemental strand, 21380204 - 21380090
Alignment:
Q  93 gatgcaatatatactgaagttgctgactgcaattttgtcgaagccatcataggtgttgtcgaaaccta-tctgttgaagcaaatgatgatgttgctgaat 191  Q
    |||||||| || ||||||||||| || |||||| || | || |||||  | | |||||||||||  |  |||||||||||||| | ||||||||||||||    
T  21380204 gatgcaatgtacactgaagttgcagattgcaatgttatggaggccattgttgatgttgtcgaaaagttgtctgttgaagcaaaagttgatgttgctgaat 21380105  T
Q  192 gtcaggtggtggagg 206  Q
    ||||| |||||||||    
T  21380104 gtcagatggtggagg 21380090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 472
Target Start/End: Original strand, 24411112 - 24411190
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaa-gcctaattttgattattgcaagcaggatcaaaccataaatcctaggaca 472  Q
    |||||| |||||||||||||||||||||| |  | |||||| ||||| ||||| ||||||||||| |||||||| ||||    
T  24411112 tgtttaccggtgtttttggtaaacaagaagggttgattttggttattacaagcgggatcaaaccagaaatcctatgaca 24411190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 540
Target Start/End: Complemental strand, 25667617 - 25667464
Alignment:
Q  395 tgtttatcggtgtttttg-gtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaat-ctttttcc 491  Q
    |||||||||||||||||  ||||||||||||  ||  ||||| ||||| ||||||||||||||| | ||||| |||||  |||||||||||  ||||| |    
T  25667617 tgtttatcggtgtttttttgtaaacaagaagggctggttttggttattacaagcaggatcaaactaaaaatcttaggagctgttgtgcaatggttttttc 25667518  T
Q  492 agaaagtgcgtgaatgttcatca-----ataggtttctttatgaagaagacgaa 540  Q
    ||||| || ||||  ||||||||     ||||||| ||||||||| ||||||||    
T  25667517 agaaaatgagtgagagttcatcaaattcataggttgctttatgaacaagacgaa 25667464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 19924312 - 19924266
Alignment:
Q  435 attattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    |||||| ||||||||||||| | | ||||||||||||||||||||||    
T  19924312 attattacaagcaggatcaacctaaaaatcctaggacatgttgtgca 19924266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 22849415 - 22849469
Alignment:
Q  460 aaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    |||| ||| ||||| |||||||||||||||||||||| ||  |||||||||||||    
T  22849415 aaatactatgacatattgtgcaatctttttccagaaaatgtatgaatgttcatca 22849469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 739
Target Start/End: Complemental strand, 24364133 - 24364038
Alignment:
Q  645 aaaaagctaactggcacgatctgcactcctttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgc--tttttgaattcaaat 739  Q
    ||||||||||||  ||||| ||||||| | | |||||||||| ||  ||||||||||||||| |||  ||||||| ||||  |||||||||||||||    
T  24364133 aaaaagctaactaccacgaactgcacttcat-ccatcgaaaactgcttgtcccccacgtcttcaataagaaaactactgctttttttgaattcaaat 24364038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 6e-30; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 395 - 536
Target Start/End: Complemental strand, 14132430 - 14132283
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaa-gcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccag 493  Q
    |||||| |||||||||||||||||||||| | ||  ||||| ||||| ||||||||||||||| | |||||| ||||||||||||||||| ||||||||     
T  14132430 tgtttaccggtgtttttggtaaacaagaaaggctggttttggttattacaagcaggatcaaactagaaatccaaggacatgttgtgcaatgtttttccaa 14132331  T
Q  494 aaagtgcgtgaatgttcatca-----ataggtttctttatgaagaaga 536  Q
    |||||| ||||||||||||||     ||||||||||||||||| ||||    
T  14132330 aaagtgagtgaatgttcatcaaattcataggtttctttatgaacaaga 14132283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 395 - 514
Target Start/End: Complemental strand, 44451217 - 44451099
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||||||||||||||||||||||| | | ||| ||||||||||| |||||| ||||||| || ||||||||||| || |||||||||||||||||| |    
T  44451217 tgtttatcggtgtttttggtaaacaacatgactagttttgattattacaagcaagatcaaatcagaaatcctagga-atattgtgcaatctttttccata 44451119  T
Q  495 aagtgcgtgaatgttcatca 514  Q
    || | | |||||||||||||    
T  44451118 aaatacatgaatgttcatca 44451099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 551 - 671
Target Start/End: Complemental strand, 27717978 - 27717858
Alignment:
Q  551 aacggcggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaat-gaaaaa 649  Q
    |||| ||||||||| ||||||||||||||||||||||||||  |||||||||| ||||||||||||||  |||||||||||||||| || | |  |||||    
T  27717978 aacgccggtacttcgagtgctagaattctataagtgatttgggacctattttt-catatgaaaaactaatatttatacatagtaaaaatgactaaaaaaa 27717880  T
Q  650 gctaactggcacgatctgcact 671  Q
    |||||||| ||||||| |||||    
T  27717879 gctaactgccacgatcagcact 27717858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 395 - 548
Target Start/End: Original strand, 12144762 - 12144920
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| ||||||||||||||||||| ||| ||  ||||| ||||| |||| ||||| |||||| |||||||| ||||||||  |||||||||||  |||    
T  12144762 tgtttaccggtgtttttggtaaacaataaggctggttttggttattacaagtaggattaaaccagaaatcctacgacatgttaggcaatcttttttaaga 12144861  T
Q  495 aagtgcgtgaatgttcatca-----ataggtttctttatgaagaagacgaagttttgta 548  Q
    |||||  |||||||||||||     |||| || ||||||||| |||| |||||||||||    
T  12144862 aagtgtttgaatgttcatcatatttatagattgctttatgaacaagatgaagttttgta 12144920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 393 - 514
Target Start/End: Original strand, 25466240 - 25466361
Alignment:
Q  393 cctgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttcca 492  Q
    |||||||| |||||||||||||||| || | | ||| ||||||||||| |||||||||||||||   ||||||||||||||||| ||||||||||| | |    
T  25466240 cctgtttaccggtgtttttggtaaataatatgactagttttgattattacaagcaggatcaaactgaaaatcctaggacatgttttgcaatcttttccta 25466339  T
Q  493 gaaagtgcgtgaatgttcatca 514  Q
    |||| |   |||||||||||||    
T  25466340 gaaaatatatgaatgttcatca 25466361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 403 - 514
Target Start/End: Complemental strand, 53589448 - 53589336
Alignment:
Q  403 ggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatct-ttttccagaaagtgcg 501  Q
    ||||||||||||||| || | | ||| ||||||||||| |||| |||||||||||| |||||||||||||| ||||||||||| |||| |||||| | |     
T  53589448 ggtgtttttggtaaataataggactagttttgattattacaagtaggatcaaaccagaaatcctaggacattttgtgcaatctttttttcagaaaataca 53589349  T
Q  502 tgaatgttcatca 514  Q
    |||||||||||||    
T  53589348 tgaatgttcatca 53589336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 395 - 514
Target Start/End: Complemental strand, 4023072 - 4022953
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| |||||||||||||||||||   | ||| || |||||||| ||||||||||||||||| || || || |||||||||||||||||||||| | |    
T  4023072 tgtttaccggtgtttttggtaaacaatgggactatttatgattattacaagcaggatcaaaccagaattcttatgacatgttgtgcaatctttttctaaa 4022973  T
Q  495 aagtgcgtgaatgttcatca 514  Q
    || | | |||||||||||||    
T  4022972 aaatacatgaatgttcatca 4022953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 395 - 514
Target Start/End: Original strand, 48895805 - 48895924
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| ||||||||||||||||| | | | |||||||| |||||| ||||||||||||||| | ||||  ||||||||| ||||||||||||||||| |    
T  48895805 tgtttaccggtgtttttggtaaactacacggctaatttttattattacaagcaggatcaaactagaaattttaggacatgatgtgcaatctttttccaaa 48895904  T
Q  495 aagtgcgtgaatgttcatca 514  Q
    || || |||| |||| ||||    
T  48895905 aaatgtgtgagtgtttatca 48895924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 559 - 636
Target Start/End: Complemental strand, 14132117 - 14132041
Alignment:
Q  559 tacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaa 636  Q
    |||||||| ||||||||||||||||||||||||| ||||  |||||| ||||||||||||| ||||||||||||||||    
T  14132117 tacttcaactgctagaattctataagtgatttgcaacct-cttttccgtatgaaaaactactatttatacatagtaaa 14132041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 25320968 - 25321050
Alignment:
Q  407 tttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttt 489  Q
    |||||||||||||| | | ||| ||||||||||| |||||| | |||||||| ||||| ||||||||||||||||||||||||    
T  25320968 tttttggtaaacaatatgactagttttgattattacaagcatggtcaaaccaaaaatcgtaggacatgttgtgcaatcttttt 25321050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 395 - 492
Target Start/End: Complemental strand, 4026716 - 4026619
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttcca 492  Q
    ||||||||||||||||| |||||||| ||  ||| |||||||||||  ||||| |||||||||| ||||  |||||||| |||| |||||||||||||    
T  4026716 tgtttatcggtgttttttgtaaacaataaaactagttttgattattataagcaagatcaaaccagaaattttaggacatattgtacaatctttttcca 4026619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 406 - 548
Target Start/End: Original strand, 15987349 - 15987497
Alignment:
Q  406 gtttttgg-taaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtga 504  Q
    |||||||| ||||||| |||  || ||||| ||||| |||| |||||||||| | |||| |||||||||||||||||||||||||||| ||| |   |||    
T  15987349 gtttttggataaacaacaagattagttttggttattacaagtaggatcaaactagaaattctaggacatgttgtgcaatctttttccataaaatatatga 15987448  T
Q  505 atgttcatca-----ataggtttctttatgaagaagacgaagttttgta 548  Q
    ||||||||||     ||||||| ||||||||| |||| |||||| ||||    
T  15987449 atgttcatcattttcataggttgctttatgaacaagatgaagttatgta 15987497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 403 - 481
Target Start/End: Complemental strand, 27304762 - 27304683
Alignment:
Q  403 ggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    ||||||||||||||| || |||  || || ||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  27304762 ggtgtttttggtaaataataagggctgatattgattattgcaagcaggatcaaaccaaaaatcctatgacatgttgtgca 27304683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 394 - 496
Target Start/End: Complemental strand, 45280295 - 45280193
Alignment:
Q  394 ctgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccag 493  Q
    |||||||||||||||||||| ||| || | |  || ||||||||||| |||| | |||||| | | ||||| ||||| ||||||||||||||||||||||    
T  45280295 ctgtttatcggtgtttttggcaaataataggattagttttgattattacaagaacgatcaacctagaaatcgtaggatatgttgtgcaatctttttccag 45280196  T
Q  494 aaa 496  Q
    |||    
T  45280195 aaa 45280193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 557 - 631
Target Start/End: Complemental strand, 53589117 - 53589043
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacata 631  Q
    |||||||| ||||||||||||||||||||||||||| |||  |||||||  |||||||||||| || ||||||||    
T  53589117 ggtacttcgagtgctagaattctataagtgatttgcgaccattttttcctaatgaaaaactactatatatacata 53589043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 397 - 515
Target Start/End: Complemental strand, 27718323 - 27718204
Alignment:
Q  397 tttatcggtgtttttggtaaacaagaagccta-attttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaa 495  Q
    |||||||||||||||||||||||| |||  |  |||||||||||| |||||| ||||||| || |||| ||  ||||||||||||||  |||||||| ||    
T  27718323 tttatcggtgtttttggtaaacaaaaaggattgattttgattattacaagcatgatcaaatcagaaattcttagacatgttgtgcaaagtttttccataa 27718224  T
Q  496 agtgcgtgaatgttcatcaa 515  Q
    || | |||||  ||||||||    
T  27718223 agggggtgaacattcatcaa 27718204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 626
Target Start/End: Complemental strand, 9101700 - 9101630
Alignment:
Q  556 cggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttat 626  Q
    ||||||||| ||||||||| || |||||||||||||| || || |||| ||||||||||||||| ||||||    
T  9101700 cggtacttcgagtgctagagttatataagtgatttgcgacatagtttttcatatgaaaaactactatttat 9101630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 618
Target Start/End: Original strand, 12145106 - 12145157
Alignment:
Q  566 agtgctagaattctataagtgatttgccacctatttttccatatgaaaaacta 618  Q
    ||||||||||||||||||||||||||| || ||||||| ||||||||||||||    
T  12145106 agtgctagaattctataagtgatttgcgacatattttt-catatgaaaaacta 12145157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 395 - 514
Target Start/End: Original strand, 1085484 - 1085597
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| ||||||||||||||||||| ||  |||||||| |  ||||||    ||||||||| | ||||||||||||||||||||||||  ||||| |||    
T  1085484 tgtttaccggtgtttttggtaaacaataaaactaattttaa--attgca----ggatcaaactagaaatcctaggacatgttgtgcaatgattttctaga 1085577  T
Q  495 aagtgcgtgaatgttcatca 514  Q
    || |   |||||||||||||    
T  1085578 aaatatatgaatgttcatca 1085597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 430 - 481
Target Start/End: Complemental strand, 4766012 - 4765961
Alignment:
Q  430 ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    ||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  4766012 ttttggttattacaagcaggaacaaaccagaaatcctaggacatgttgtgca 4765961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 402 - 481
Target Start/End: Complemental strand, 4832877 - 4832798
Alignment:
Q  402 cggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    |||||||||||||||||||  ||  |  ||||| ||||| |||| |||||||||||| |||||| |||||||||||||||    
T  4832877 cggtgtttttggtaaacaacgagggttgttttggttattacaagtaggatcaaaccaaaaatcccaggacatgttgtgca 4832798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 395 - 548
Target Start/End: Complemental strand, 9101988 - 9101829
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaat-ctttttccag 493  Q
    |||||| |||| | |||||||||||||||| |||| |||||||||| |||| || ||||||| | |||| ||| || || |||||||||  ||||| ||     
T  9101988 tgtttaccggtatatttggtaaacaagaagactaactttgattattacaagaagcatcaaactagaaattctatgatatattgtgcaatgtttttttcaa 9101889  T
Q  494 aaagtgcgtgaatgttcatca-----ataggtttctttatgaagaagacgaagttttgta 548  Q
    ||||||  |||||||| ||||     ||||||| ||||||||| ||||| || |||||||    
T  9101888 aaagtgtctgaatgtttatcatattcataggttgctttatgaacaagacaaatttttgta 9101829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 482
Target Start/End: Original strand, 5495365 - 5495405
Alignment:
Q  442 caagcaggatcaaaccataaatcctaggacatgttgtgcaa 482  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  5495365 caagaaggatcaaaccagaaatcctaggacatgttgtgcaa 5495405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 514
Target Start/End: Complemental strand, 17439439 - 17439367
Alignment:
Q  442 caagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    |||||| ||||||| |||||||| || ||||||||  ||||||||||| |||||| ||  |||||||||||||    
T  17439439 caagcatgatcaaatcataaatcataagacatgttaagcaatcttttttcagaaattgtatgaatgttcatca 17439367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 496
Target Start/End: Complemental strand, 7536457 - 7536359
Alignment:
Q  397 tttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaa 496  Q
    |||| ||||| ||||||||||| | ||| |||  |||||||||| | || |||||||||| | ||||| || |||||||| ||||||||||||| |||||    
T  7536457 tttaccggtgattttggtaaactacaagtctagctttgattattacgagtaggatcaaactagaaatc-tatgacatgttctgcaatctttttctagaaa 7536359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 481
Target Start/End: Complemental strand, 8737534 - 8737455
Alignment:
Q  403 ggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    |||||||||||||||||| |||  ||  |||| |||||| |||||| |||||||| | |||| |||||||||||||||||    
T  8737534 ggtgtttttggtaaacaataagggctggtttttattattacaagcatgatcaaactagaaattctaggacatgttgtgca 8737455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 481
Target Start/End: Complemental strand, 9089772 - 9089693
Alignment:
Q  403 ggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    |||||||||||||||||| |||  ||  |||| |||||| |||||| |||||||| | |||| |||||||||||||||||    
T  9089772 ggtgtttttggtaaacaataagggctggtttttattattacaagcatgatcaaactagaaattctaggacatgttgtgca 9089693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 739
Target Start/End: Original strand, 12145212 - 12145259
Alignment:
Q  692 tgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaat 739  Q
    ||||||||||||||| ||||| ||||| | ||||||||||||||||||    
T  12145212 tgtcccccacgtcttcaatggcaaaaccgttgctttttgaattcaaat 12145259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 649
Target Start/End: Original strand, 15759703 - 15759775
Alignment:
Q  576 ttctataagtgatttgccacctatttttccatatgaa-aaactaccatttatacatagtaaatataaatgaaaaa 649  Q
    |||||||| |||||||| ||| ||||| ||||||||| ||||||| |||||||||||||||| |||| |||||||    
T  15759703 ttctataaatgatttgcgacccatttt-ccatatgaataaactactatttatacatagtaaa-ataactgaaaaa 15759775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 557 - 739
Target Start/End: Original strand, 23455251 - 23455433
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatg-aaaaagctaac 655  Q
    |||||||| ||||||||||||||||||| ||||||| ||| ||||||  |||||||||||||  ||||||||||||| || |||| || |||||||||||    
T  23455251 ggtacttcgagtgctagaattctataagagatttgcaaccaatttttttatatgaaaaactattatttatacatagtgaaaataactgtaaaaagctaac 23455350  T
Q  656 tggcacgatctgcactcctttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaat 739  Q
    || ||||| ||||||| | ||| | |||||| ||  ||||||||||||||| |||  |||||||| || ||||| |||||||||    
T  23455351 tgccacgaactgcacttc-ttctaacgaaaactgcatgtcccccacgtcttcaataagaaaactgatgattttttaattcaaat 23455433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 397 - 548
Target Start/End: Complemental strand, 33379682 - 33379526
Alignment:
Q  397 tttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaa 496  Q
    |||| ||||||||||||||||||| |||  || ||||||||||| ||||||||| |||| || ||||| |||||||| ||||||||||||||| || |||    
T  33379682 tttaccggtgtttttggtaaacaacaagattagttttgattattacaagcaggaccaaatcagaaatcttaggacatattgtgcaatcttttttcataaa 33379583  T
Q  497 gtgcgtgaatgttcatca-----ataggtttctttatgaagaagacgaagttttgta 548  Q
    ||   |||||||||||||     ||||||| ||||||||| |||| |||||| ||||    
T  33379582 gtatatgaatgttcatcatatccataggttgctttatgaacaagatgaagttgtgta 33379526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 395 - 514
Target Start/End: Complemental strand, 24634090 - 24633971
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| || ||||||| |||||||| ||| ||| ||||||||||| |||||||||||| ||||||||||||  |||||||| |||||| |||||| |||    
T  24634090 tgtttaccgatgtttttcgtaaacaataagactagttttgattattacaagcaggatcacaccataaatcctttgacatgttatgcaatttttttctaga 24633991  T
Q  495 aagtgcgtgaatgttcatca 514  Q
    || ||  |||||||||||||    
T  24633990 aattgtatgaatgttcatca 24633971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 395 - 489
Target Start/End: Complemental strand, 44787681 - 44787587
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttt 489  Q
    |||||| ||||||||||| ||||||| ||| ||| ||||||||||| |||  |||||||||||||||||| || |||||||||||||||||||||    
T  44787681 tgtttaccggtgtttttgataaacaacaagactagttttgattattacaactaggatcaaaccataaatcatatgacatgttgtgcaatcttttt 44787587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 430 - 514
Target Start/End: Original strand, 25018448 - 25018532
Alignment:
Q  430 ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||||||    
T  25018448 ttttgattattacaagcatgatcaaaccagaaatcctaggacatgttgtgcaatctttttctagaaaatacgcgagtgttcatca 25018532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 403 - 481
Target Start/End: Complemental strand, 36572045 - 36571966
Alignment:
Q  403 ggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    |||||||||||||||||| |||  || |||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  36572045 ggtgtttttggtaaacaataagggctgattttgattattgcaagcagaatcaaaccataaattctaggacatgttgtgca 36571966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 413 - 492
Target Start/End: Original strand, 16083440 - 16083519
Alignment:
Q  413 gtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttcca 492  Q
    |||||||| ||| ||| ||||||||||| ||| ||||||||||||| ||| ||||||||||||| |||||||||||||||    
T  16083440 gtaaacaacaagactagttttgattattacaaacaggatcaaaccagaaaccctaggacatgttatgcaatctttttcca 16083519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 430 - 489
Target Start/End: Original strand, 17615069 - 17615128
Alignment:
Q  430 ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttt 489  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  17615069 ttttaattattacaagcaggatcaaaccagaaatcctaggacatgttgtgcaatgttttt 17615128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 430 - 481
Target Start/End: Original strand, 33102843 - 33102894
Alignment:
Q  430 ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  33102843 ttttgattattacaagcaggatcaaaccagaaatcttaggacatgttgtgca 33102894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 705
Target Start/End: Complemental strand, 33379357 - 33379208
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatg--aaaaagct-a 653  Q
    |||||||| ||| |||||||| |||||||||||||| | ||| |||| ||||||||||||||  |||||| ||||| | | |||| ||  || ||||| |    
T  33379357 ggtacttcgagtactagaattttataagtgatttgcga-ctaatttttcatatgaaaaactattatttatgcatagaagaaataactgtaaagaagctaa 33379259  T
Q  654 actggcacgatctgcactcctttccatcgaaaattgtctgtcccccacgtct 705  Q
    |||| ||||| ||||||| |||| ||||||||| ||| |||| |||||||||    
T  33379258 actgccacgagctgcacttcttt-catcgaaaactgtatgtctcccacgtct 33379208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 631
Target Start/End: Complemental strand, 24633314 - 24633241
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacata 631  Q
    |||||||||||||||||||| | |||||||||||| || | |||||| | ||||||||||||| || ||||||||    
T  24633314 ggtacttcaagtgctagaataccataagtgatttg-cagccattttttcttatgaaaaactactatatatacata 24633241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 617
Target Start/End: Original strand, 25018745 - 25018802
Alignment:
Q  559 tacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaact 617  Q
    |||||| ||||| ||||||||||||||||||||| |||| ||||| |||||||||||||    
T  25018745 tacttcgagtgccagaattctataagtgatttgcgacctgttttt-catatgaaaaact 25018802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 11110461 - 11110510
Alignment:
Q  447 aggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaa 496  Q
    |||||||||| | |||||||| |||| |||||||||||||||||||||||    
T  11110461 aggatcaaactaaaaatcctatgacacgttgtgcaatctttttccagaaa 11110510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 484
Target Start/End: Complemental strand, 22785406 - 22785329
Alignment:
Q  407 tttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatc 484  Q
    |||||||||||||| |||  || ||||||||||| |||| | ||||||| || |||| |||| |||||||||||||||    
T  22785406 tttttggtaaacaataaggttagttttgattattacaagtaagatcaaatcagaaattctagaacatgttgtgcaatc 22785329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 632
Target Start/End: Complemental strand, 13202104 - 13202049
Alignment:
Q  576 ttctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatag 632  Q
    ||||||||||||||||| || | ||||||| ||||||||||||| ||||||||||||    
T  13202104 ttctataagtgatttgcgacatgtttttcc-tatgaaaaactactatttatacatag 13202049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 395 - 514
Target Start/End: Original strand, 13966166 - 13966286
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgtt-gtgcaatctttttccag 493  Q
    |||||| || ||||||||||||||||   | ||| || ||||||||  |||||||||||||||| ||||| || || ||||| || ||||||||||| |     
T  13966166 tgtttaccgatgtttttggtaaacaatgggactagttatgattattctaagcaggatcaaaccagaaatcttatgaaatgttggtacaatctttttctaa 13966265  T
Q  494 aaagtgcgtgaatgttcatca 514  Q
    ||| | | |||||||||||||    
T  13966266 aaaatacatgaatgttcatca 13966286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 481
Target Start/End: Complemental strand, 22608180 - 22608133
Alignment:
Q  434 gattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    ||||||| ||| || |||||||||| ||||||||||||||||||||||    
T  22608180 gattattacaaacatgatcaaaccagaaatcctaggacatgttgtgca 22608133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 395 - 492
Target Start/End: Original strand, 13962637 - 13962735
Alignment:
Q  395 tgtttatcggtgtttttg-gtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttcca 492  Q
    |||||||||||||||||  |||||||| |   ||| ||| ||||||| |||||| |||||||||||||||  ||||| || || | |||||||||||||    
T  13962637 tgtttatcggtgtttttttgtaaacaatagaactagtttggattattacaagcaagatcaaaccataaattttaggatatattatacaatctttttcca 13962735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 556 - 739
Target Start/End: Complemental strand, 25621115 - 25620934
Alignment:
Q  556 cggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagctaa 654  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||| |||| | |||||||||||    
T  25621115 cggtacttcgagtgctagaattttataagtgatttgcgacctattttt-catatgaaaaactactatttacacatagtaaaaataactagaaaaagctaa 25621017  T
Q  655 ctggcacgatctgcactcctttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaat 739  Q
    ||| ||||| |  |||| | ||||||| |||| ||  ||||||||||||||| | |  | |||| ||||| ||||||||||||||    
T  25621016 ctgccacgaacaacacttc-ttccatcaaaaactgattgtcccccacgtcttcattaaggaaaccgctgc-ttttgaattcaaat 25620934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 557 - 663
Target Start/End: Complemental strand, 7524752 - 7524646
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagctaac 655  Q
    ||||||| |||||||| ||||||||||||||||||  ||||||||| |||||||||||||||| |||||||||||||||| | || | ||||||||||||    
T  7524752 ggtacttgaagtgctataattctataagtgatttgtgacctatttt-ccatatgaaaaactactatttatacatagtaaaaacaactggaaaaagctaac 7524654  T
Q  656 tggcacga 663  Q
    || |||||    
T  7524653 tgccacga 7524646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 395 - 514
Target Start/End: Complemental strand, 11994268 - 11994150
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||||||||||||||||||||||| | | ||| |||| |||||| |||||||||||||| || ||||||||||| || ||||||||| |||||||| |    
T  11994268 tgtttatcggtgtttttggtaaacaacatgactagtttttattattacaagcaggatcaaatcagaaatcctagga-atattgtgcaatatttttccata 11994170  T
Q  495 aagtgcgtgaatgttcatca 514  Q
    || | | |||||||||||||    
T  11994169 aaatacatgaatgttcatca 11994150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 404 - 515
Target Start/End: Complemental strand, 7525063 - 7524952
Alignment:
Q  404 gtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtg 503  Q
    ||||||||||||||||||| | || |||||| ||||| |||| |||||||||||| |||||||| |||||| || ||||| ||||| ||||||||  |||    
T  7525063 gtgtttttggtaaacaagaggactgattttggttattacaagtaggatcaaaccagaaatcctaagacatggtgcgcaatgttttttcagaaagtaagtg 7524964  T
Q  504 aatgttcatcaa 515  Q
    | ||||||||||    
T  7524963 agtgttcatcaa 7524952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 395 - 509
Target Start/End: Complemental strand, 7948329 - 7948215
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| |||| |||||||||||||| | | ||| | ||||||||| ||| ||||||||||||||||||||||||||| |  |||||||||||||||| |    
T  7948329 tgtttagcggtatttttggtaaacaataggactagtcttgattattacaaacaggatcaaaccataaatcctaggacacggcgtgcaatctttttccata 7948230  T
Q  495 aagtgcgtgaatgtt 509  Q
    || | | ||||||||    
T  7948229 aaatacatgaatgtt 7948215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 28036940 - 28037050
Alignment:
Q  404 gtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtg 503  Q
    ||||||||| ||||||| ||  ||| ||||||||||| |||| ||||||||| || ||||| ||||| ||||||||||||||||||  ||||||||  ||    
T  28036940 gtgtttttgttaaacaacaaaactagttttgattattacaagtaggatcaaatcagaaatcttaggatatgttgtgcaatctttttttagaaagtgtatg 28037039  T
Q  504 aatgttcatca 514  Q
    |||||||||||    
T  28037040 aatgttcatca 28037050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 556 - 663
Target Start/End: Complemental strand, 4978840 - 4978732
Alignment:
Q  556 cggtacttcaagtgctagaatt-ctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagcta 653  Q
    ||||||||| |||||||||||| |||||||| |||||| ||||||||||| ||||||||||||||  |||||||||||| || |||| | ||||||||||    
T  4978840 cggtacttcgagtgctagaatttctataagtaatttgcgacctatttttc-atatgaaaaactacattttatacatagtgaaaataactggaaaaagcta 4978742  T
Q  654 actggcacga 663  Q
    |||| |||||    
T  4978741 actgccacga 4978732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 395 - 511
Target Start/End: Complemental strand, 25621441 - 25621325
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| |||||||||||||||||||||||  ||  |||||||||| |||| |||||||||| |||||| ||| || |||||| ||||| |||||| |||    
T  25621441 tgtttaccggtgtttttggtaaacaagaagattagctttgattattacaaggaggatcaaactataaattctatgatatgttgcgcaatgtttttctaga 25621342  T
Q  495 aagtgcgtgaatgttca 511  Q
    ||||   ||||||||||    
T  25621341 aagtatatgaatgttca 25621325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 403 - 489
Target Start/End: Original strand, 12468695 - 12468781
Alignment:
Q  403 ggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttt 489  Q
    |||||||| ||||||||| | | ||| ||||||||||| |||||| | |||| ||| ||||||||||||||||| ||||||||||||    
T  12468695 ggtgttttgggtaaacaatatgactagttttgattattacaagcatggtcaatccagaaatcctaggacatgttatgcaatcttttt 12468781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 429 - 515
Target Start/End: Original strand, 18046265 - 18046351
Alignment:
Q  429 attttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatcaa 515  Q
    |||||| ||||| ||||||||||||||| | |||| ||||||||||||||||||  ||||||||||||  | ||||| |||||||||    
T  18046265 attttggttattacaagcaggatcaaactagaaatactaggacatgttgtgcaaagtttttccagaaaaagagtgaacgttcatcaa 18046351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 515
Target Start/End: Original strand, 41131725 - 41131810
Alignment:
Q  430 ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatcaa 515  Q
    ||||||||||| |||||| |||||||  | |||| |||||| |||||||||||  |||||| |||||||| ||||| |||||||||    
T  41131725 ttttgattattacaagcacgatcaaattagaaattctaggatatgttgtgcaaagtttttctagaaagtgagtgaacgttcatcaa 41131810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 395 - 511
Target Start/End: Complemental strand, 4979172 - 4979056
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| ||||||||||| ||||| | ||| |||  ||||||||||  |||||||||| ||  | ||||   |||||||||||||||||||||||| |||    
T  4979172 tgtttaccggtgtttttgttaaactacaagtctagctttgattattagaagcaggatcgaattagaaatttcaggacatgttgtgcaatctttttctaga 4979073  T
Q  495 aagtgcgtgaatgttca 511  Q
    || ||  ||||||||||    
T  4979072 aaatgtatgaatgttca 4979056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 632
Target Start/End: Original strand, 12469031 - 12469096
Alignment:
Q  566 agtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatag 632  Q
    ||||||||||||||||||||||||||| ||| | |||||| ||||||||||||| || | |||||||    
T  12469031 agtgctagaattctataagtgatttgcgaccca-ttttccttatgaaaaactactatatgtacatag 12469096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 460 - 540
Target Start/End: Complemental strand, 9022818 - 9022733
Alignment:
Q  460 aaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca-----ataggtttctttatgaagaagacgaa 540  Q
    |||||||||||||||||||||||| ||||| || ||| || ||||| ||||||||     ||||||| ||||||||| ||||||||    
T  9022818 aaatcctaggacatgttgtgcaatgtttttacaaaaaatgagtgaacgttcatcaaattcataggttgctttatgaacaagacgaa 9022733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 496
Target Start/End: Original strand, 17914328 - 17914428
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| |||||||||||||||||||||  | ||||||| |   || |  |||||| ||||| | ||||||||||||||||| |||||| ||||||||||    
T  17914328 tgtttaccggtgtttttggtaaacaagacac-taattttaaaagtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgtttttccaga 17914426  T
Q  495 aa 496  Q
    ||    
T  17914427 aa 17914428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 592
Target Start/End: Complemental strand, 1545634 - 1545599
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgc 592  Q
    ||||||||||||||| ||||||||||||||||||||    
T  1545634 ggtacttcaagtgctcgaattctataagtgatttgc 1545599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 482
Target Start/End: Original strand, 18084069 - 18084148
Alignment:
Q  404 gtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaa 482  Q
    |||||||||||||||||||||  ||  ||||| ||||| |||| |||||||||| | ||||||||  |||||||||||||    
T  18084069 gtgtttttggtaaacaagaagggctggttttggttattacaagaaggatcaaactagaaatcctaatacatgttgtgcaa 18084148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 708
Target Start/End: Original strand, 41132069 - 41132177
Alignment:
Q  600 ttttccatatgaaaaactaccatttatacatagtaaatataaatgaaaaa--gctaactggcacgatctgcactcctttccatcgaaaattgtctgtccc 697  Q
    |||||||| || |||||||| |||||||||||||||| |||| |||||||   ||||||  |||||||  |||| | |||||||||||| ||| |||||     
T  41132069 ttttccatctggaaaactactatttatacatagtaaa-ataactgaaaaaagactaactaccacgatcatcacttc-ttccatcgaaaactgtttgtcct 41132166  T
Q  698 ccacgtcttta 708  Q
    |||||||||||    
T  41132167 ccacgtcttta 41132177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 556 - 663
Target Start/End: Complemental strand, 26654137 - 26654030
Alignment:
Q  556 cggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatg-aaaaagctaa 654  Q
    ||||||||| ||||||| ||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||| || |||| || ||||||||||    
T  26654137 cggtacttcgagtgctaaaattctataagtgatttgcgatctattttt-catatgaaaaactactatttatacatagtgaaaataactgaaaaaagctaa 26654039  T
Q  655 ctggcacga 663  Q
    ||| |||||    
T  26654038 ctgccacga 26654030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 404 - 515
Target Start/End: Original strand, 16288508 - 16288619
Alignment:
Q  404 gtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtg 503  Q
    ||||||||||||||| ||||| ||| ||||||||| | ||| ||  || |||||| ||| | |  |||||||||||||||||||||||||||||||  ||    
T  16288508 gtgtttttggtaaactagaagactagttttgattaatacaaacaacattaaaccagaaaccttcagacatgttgtgcaatctttttccagaaagtgtatg 16288607  T
Q  504 aatgttcatcaa 515  Q
    | ||||||||||    
T  16288608 attgttcatcaa 16288619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 395 - 496
Target Start/End: Original strand, 6337761 - 6337863
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccag 493  Q
    |||||||||||||||||| |||||||||||  || |||||| ||||| ||  ||| ||||||||| ||||| |||||||||||||||||  ||||| |||    
T  6337761 tgtttatcggtgtttttgataaacaagaagggctgattttggttattacagacagaatcaaaccagaaatcttaggacatgttgtgcaaagttttttcag 6337860  T
Q  494 aaa 496  Q
    |||    
T  6337861 aaa 6337863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 404 - 510
Target Start/End: Original strand, 43851308 - 43851414
Alignment:
Q  404 gtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtg 503  Q
    |||||||| |||||||| | | ||  |||| |||||| |||||||||| ||| || |||||||||||||||||| ||||||||||| |||||| | | ||    
T  43851308 gtgttttttgtaaacaataggacttgtttttattattacaagcaggataaaatcagaaatcctaggacatgttgcgcaatcttttttcagaaaatacatg 43851407  T
Q  504 aatgttc 510  Q
    |||||||    
T  43851408 aatgttc 43851414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 406 - 489
Target Start/End: Original strand, 24924634 - 24924717
Alignment:
Q  406 gtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttt 489  Q
    ||||||||||||||||| | ||| |||||||||||  ||||| |||||||||| |||| ||||||||| |||| |||| |||||    
T  24924634 gtttttggtaaacaagatgactagttttgattattataagcatgatcaaaccagaaatactaggacatattgtacaattttttt 24924717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 4732398 - 4732474
Alignment:
Q  404 gtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    ||||||||||||||||| | | ||  ||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  4732398 gtgtttttggtaaacaa-agggctggttttggttattacaaacaggatcaaaccagaaatcctaggacatgttgtgca 4732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 449 - 514
Target Start/End: Complemental strand, 6244212 - 6244147
Alignment:
Q  449 gatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    |||||||| | |||||||| | |||||||||||||||||||||||||| ||  |||||||||||||    
T  6244212 gatcaaactagaaatcctatgccatgttgtgcaatctttttccagaaaatgtttgaatgttcatca 6244147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 515
Target Start/End: Complemental strand, 9354797 - 9354685
Alignment:
Q  404 gtgtttttggtaaacaagaa-gcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgt 502  Q
    |||||||||||||| ||||| | ||  ||||| ||||| ||  || |||||||||| ||||  |||||||||||||||||| ||||||||||||  | ||    
T  9354797 gtgtttttggtaaataagaaaggctggttttggttattacattcatgatcaaaccagaaattataggacatgttgtgcaatgtttttccagaaaaagagt 9354698  T
Q  503 gaatgttcatcaa 515  Q
    ||| |||||||||    
T  9354697 gaacgttcatcaa 9354685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 551 - 631
Target Start/End: Original strand, 24924960 - 24925039
Alignment:
Q  551 aacggcggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacata 631  Q
    |||| ||||||||| ||||||||||||||||||||||||||| | |  ||||| || |||||||||||| || ||||||||    
T  24924960 aacgccggtacttcgagtgctagaattctataagtgatttgcgaac-cttttttcaaatgaaaaactactatatatacata 24925039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 403 - 511
Target Start/End: Complemental strand, 26654441 - 26654333
Alignment:
Q  403 ggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgt 502  Q
    |||||||||||||||| |  || |||  |||| ||||| |||||| |||||||| | |||||| | ||||||||||||||  |||||||||||| ||  |    
T  26654441 ggtgtttttggtaaactactagtctagctttgtttattacaagcatgatcaaactagaaatcccatgacatgttgtgcaaagtttttccagaaaatgtat 26654342  T
Q  503 gaatgttca 511  Q
    |||||||||    
T  26654341 gaatgttca 26654333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 557 - 632
Target Start/End: Original strand, 16647147 - 16647221
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatag 632  Q
    |||||||  ||||||||||||||||||||||||||| |||  ||||| | ||||||||||||| || |||||||||    
T  16647147 ggtactttgagtgctagaattctataagtgatttgcgacc-cttttttcttatgaaaaactactatatatacatag 16647221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 437 - 496
Target Start/End: Original strand, 16674905 - 16674964
Alignment:
Q  437 tattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaa 496  Q
    ||||||||| |||||||||| | |||| ||||||||||||||||||  ||||||||||||    
T  16674905 tattgcaagtaggatcaaacaagaaattctaggacatgttgtgcaaagtttttccagaaa 16674964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 24476117 - 24476186
Alignment:
Q  445 gcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca 514  Q
    |||||||||||| | |||||  | | |||||||||||||||||||||||||| ||  |||||||||||||    
T  24476117 gcaggatcaaactaaaaatcgcaaggcatgttgtgcaatctttttccagaaaatgtttgaatgttcatca 24476186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 656
Target Start/End: Original strand, 12568226 - 12568327
Alignment:
Q  556 cggtacttcaagtgctagaatt-ctataagtgatttgccacct-atttttccatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagct 652  Q
    ||||||||| |||||||||||| ||||||  ||||||| |||| ||||||  |||||||||||||| |||||||||||| ||| | || | |||||||||    
T  12568226 cggtacttcgagtgctagaatttctataaaagatttgcgacctcattttt--atatgaaaaactactatttatacatagcaaaaacaactggaaaaagct 12568323  T
Q  653 aact 656  Q
    ||||    
T  12568324 aact 12568327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 636
Target Start/End: Complemental strand, 16928602 - 16928543
Alignment:
Q  576 ttctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaa 636  Q
    ||||||||| ||||||| ||||||||| ||||||| |||||||  ||||||||||||||||    
T  16928602 ttctataagggatttgcgacctatttt-ccatatggaaaactattatttatacatagtaaa 16928543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 395 - 473
Target Start/End: Original strand, 5357768 - 5357849
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaa-gcctaattttgattattgcaagcagg--atcaaaccataaatcctaggacat 473  Q
    |||||| ||||||||||||||||||| || | || |||||||||||| ||||||||  ||||||| | ||||||||| ||||    
T  5357768 tgtttagcggtgtttttggtaaacaataagggctgattttgattattacaagcaggatatcaaactagaaatcctagtacat 5357849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 493
Target Start/End: Original strand, 4697284 - 4697329
Alignment:
Q  448 ggatcaaaccataaatcctaggacatgttgtgcaatctttttccag 493  Q
    ||||||||||| ||||| |||||||||||||||||  |||||||||    
T  4697284 ggatcaaaccagaaatcataggacatgttgtgcaaagtttttccag 4697329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 557 - 739
Target Start/End: Complemental strand, 2964 - 2783
Alignment:
Q  557 ggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatg-aaaaagctaac 655  Q
    |||||||| |||||||||||||||| || ||||||| ||| ||||||  |||||||||||||  ||||||||||||| || |||| || |||||||||||    
T  2964 ggtacttcgagtgctagaattctatgagagatttgcaaccaattttt-tatatgaaaaactattatttatacatagtgaaaataactgtaaaaagctaac 2866  T
Q  656 tggcacgatctgcactcctttccatcgaaaattgtctgtcccccacgtctttaatgggaaaactgctgctttttgaattcaaat 739  Q
    || |||||  |||||| | ||| | |||||| ||  ||||||||||||||| |||  |||||||| || ||||| |||||||||    
T  2865 tgccacgaattgcacttc-ttctaacgaaaactgcatgtcccccacgtcttcaataagaaaactgatgattttttaattcaaat 2783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 436 - 540
Target Start/End: Complemental strand, 33540 - 33431
Alignment:
Q  436 ttattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtgaatgttcatca-----ataggtttctttatga 530  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||  ||||||||||||||| |||| |||||||||     ||||||| ||||||||    
T  33540 ttattacaagcaggatcaaaccagaaatcctatgacatgttgtgcaaagtttttccagaaagtgagtgagtgttcatcagactcataggttgctttatga 33441  T
Q  531 agaagacgaa 540  Q
    | ||||||||    
T  33440 acaagacgaa 33431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 636
Target Start/End: Complemental strand, 51649 - 51570
Alignment:
Q  556 cggtacttcaagtgctagaattctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaa 636  Q
    ||||||| | ||||||||||||||||||  ||||| | ||| ||||| ||||||| |||||||| ||||||||||||||||    
T  51649 cggtactgcgagtgctagaattctataaacgatttacgacccatttt-ccatatggaaaactactatttatacatagtaaa 51570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 395 - 482
Target Start/End: Complemental strand, 51958 - 51870
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcc-taattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaa 482  Q
    |||| |||||||||||||||||||||||||   |  ||||  ||||| |||||||||||||| || |||| ||||||||||||||||||    
T  51958 tgttaatcggtgtttttggtaaacaagaagggatggttttagttattacaagcaggatcaaatcagaaattctaggacatgttgtgcaa 51870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 395 - 514
Target Start/End: Original strand, 89532 - 89651
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccaga 494  Q
    |||||| |||||||||| |||||||| ||| ||| ||||||||||| |||| ||||| ||| || |||||||||||||| ||| |||||||||||||| |    
T  89532 tgtttaccggtgtttttagtaaacaataagactagttttgattattacaaggaggattaaagcagaaatcctaggacatattgcgcaatctttttccata 89631  T
Q  495 aagtgcgtgaatgttcatca 514  Q
    || |   |||||||||||||    
T  89632 aaatatatgaatgttcatca 89651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 576 - 657
Target Start/End: Complemental strand, 10276 - 10195
Alignment:
Q  576 ttctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataa-atgaaaaagctaactg 657  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||  |||||||| ||||||    
T  10276 ttctataagtgatttgcgacctatttttc-atatgaaaaactactatttatacatagtaaatataacttgaaaaagttaactg 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 405 - 509
Target Start/End: Complemental strand, 835 - 731
Alignment:
Q  405 tgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaagtgcgtga 504  Q
    |||||||||||||| | ||| |||  |||||||||| |||||| | |||||| | ||||||||||||||||||||||||||||||||| ||| ||  |||    
T  835 tgtttttggtaaactacaagtctagctttgattattacaagcaagttcaaactagaaatcctaggacatgttgtgcaatctttttccataaaatgtatga 736  T
Q  505 atgtt 509  Q
    |||||    
T  735 atgtt 731  T

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Target: scaffold0148 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 395 - 514
Target Start/End: Original strand, 22768 - 22888
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctagga-catgttgtgcaatctttttccag 493  Q
    ||||||| |||||||||||||||||| | |  || ||||| |||||||||| |||||||||| | |||| |||||| |||||||||||||  ||||||||    
T  22768 tgtttataggtgtttttggtaaacaatagggttagttttggttattgcaagaaggatcaaactagaaattctaggagcatgttgtgcaatgattttccag 22867  T
Q  494 aaagtgcgtgaatgttcatca 514  Q
    ||| ||   ||||||||||||    
T  22868 aaactgatcgaatgttcatca 22888  T

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Target: scaffold0320 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 576 - 657
Target Start/End: Original strand, 6508 - 6589
Alignment:
Q  576 ttctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaat-gaaaaagctaactg 657  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||| |||| | ||||||| ||||||    
T  6508 ttctataagtgatttgcgacctatttttc-atatgaaaaactactatttatacatattaaaaataactggaaaaagttaactg 6589  T

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Target: scaffold0337 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 4321 - 4406
Alignment:
Q  395 tgtttatcggtgtttttggtaaacaagaagcc-taattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtg 479  Q
    |||||| ||||||||||||||||||| |||   |  ||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  4321 tgtttaccggtgtttttggtaaacaataagggatggttttgattattacaagcaggatcaaaccagaaatcctaggacgtgttgtg 4406  T

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Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 376539 - 376452
Alignment:
Q  394 ctgtttatcggtgtttttggtaaacaagaagc--ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtg 479  Q
    ||||||| | ||||||||||||||||| |||   ||  ||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  376539 ctgtttaccagtgtttttggtaaacaataaggggctggttttgattattacaaggaggatcaaaccagaaatcctaggacatgttgtg 376452  T

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Target: scaffold0142 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 396 - 482
Target Start/End: Original strand, 20315 - 20402
Alignment:
Q  396 gtttatcggtgtttttggtaaacaagaagcc-taattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaa 482  Q
    ||||| ||||||||| |||||||||||||   |  ||||| ||||| ||||||||||||||||| ||||| | |||||||||||||||    
T  20315 gtttaccggtgttttgggtaaacaagaagggatggttttggttattacaagcaggatcaaaccagaaatcttgggacatgttgtgcaa 20402  T

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Target: scaffold0346 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0346
Description:

Target: scaffold0346; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 496
Target Start/End: Complemental strand, 12461 - 12367
Alignment:
Q  403 ggtgtttttggtaaacaagaagcctaattttga-ttattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaa 496  Q
    |||||||||| ||||||| ||| |||||||| | ||||| |  | |||||||||  |||||| |||||||||||||||||||  |||||||||||    
T  12461 ggtgtttttgataaacaataagactaattttaaattattacttgtaggatcaaaatataaattctaggacatgttgtgcaatgattttccagaaa 12367  T

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Target: scaffold0040 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 636
Target Start/End: Complemental strand, 26923 - 26842
Alignment:
Q  556 cggtacttcaagtgct-agaatt-ctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaa 636  Q
    ||||||||| |||||| |||||| |||||| |||||||| ||| ||||| ||||||| |||||||| ||||||||||||||||    
T  26923 cggtacttcgagtgcttagaatttctataaatgatttgcgacccatttt-ccatatggaaaactactatttatacatagtaaa 26842  T

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Target: scaffold0608 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 5898 - 5947
Alignment:
Q  447 aggatcaaaccataaatcctaggacatgttgtgcaatctttttccagaaa 496  Q
    |||||||||| | |||||||| |||| |||||||||||||||||||||||    
T  5898 aggatcaaactaaaaatcctatgacacgttgtgcaatctttttccagaaa 5947  T

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Target: scaffold0065 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 479
Target Start/End: Original strand, 15101 - 15150
Alignment:
Q  430 ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtg 479  Q
    ||||||||||| |||||| |||||||||| |||||||||||| |||||||    
T  15101 ttttgattattacaagcatgatcaaaccacaaatcctaggacgtgttgtg 15150  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 649
Target Start/End: Complemental strand, 38887 - 38816
Alignment:
Q  576 ttctataagtgatttgccacctatttttccatatgaaaaactaccatttatacatagtaaatataaatgaaaaa 649  Q
    ||||||||||||||||  ||||||||| ||||||| |||||||| |||||||||||| ||| |||| |||||||    
T  38887 ttctataagtgatttgtgacctatttt-ccatatggaaaactactatttatacatagcaaa-ataactgaaaaa 38816  T

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Target: scaffold0024; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 481
Target Start/End: Complemental strand, 39245 - 39168
Alignment:
Q  405 tgtttttggtaaacaagaagc-ctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 481  Q
    |||||||||  |||||||||  ||| ||||| ||||| ||||||||||||||| | ||||| ||||||||||||||||    
T  39245 tgtttttggcgaacaagaaggtctagttttggttattacaagcaggatcaaactagaaatcttaggacatgttgtgca 39168  T

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Target: scaffold1102 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 482
Target Start/End: Complemental strand, 1224 - 1172
Alignment:
Q  430 ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaa 482  Q
    ||||| ||||| |||||| |||||||||| |||| ||||||||||||||||||    
T  1224 ttttggttattacaagcaagatcaaaccagaaattctaggacatgttgtgcaa 1172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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