View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0018-INSERTION-12 (Length: 580)
Name: NF0018-INSERTION-12
Description: NF0018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0018-INSERTION-12 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 22 - 455
Target Start/End: Original strand, 39950505 - 39950937
Alignment:
| Q |
22 |
actaagctgaactaaaagggcaatcttcctgttcaaccaaagagaaatccgcgggctgttttttcaaattgataacttatgattgttttttcaattgata |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
39950505 |
actaagctgaactaaaagggcaatcttcctgttcaaccaaagagaaatccgcgggctgttttttgaaattgataagttatgattgttttttcaattgata |
39950604 |
T |
|
| Q |
122 |
ttcacttaccaaannnnnnnnnnngtttatttgcaatgtagtcgacctgaccgaattgtcgccatagctgagaggtttggaatggatccatgggctgtac |
221 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39950605 |
ttcacttaccaa--ttttttttttgtttatttgcaatgtagtcgacctgaccgaattgtcgccatagctgagaggtttggaatggatccatgggctgtac |
39950702 |
T |
|
| Q |
222 |
tggacaatgtaagtttcctttgtttcataacctgattgtgaatattttggtgctgactgcttaccagtttctgtatgtgaatgcacaaga-ttatctatg |
320 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39950703 |
tggacaatgtaattttcctttgtttcataacctgattgtgaatattttggtgctgactgcttaccagtttctgtatgtgaatgcacaagatttatctatg |
39950802 |
T |
|
| Q |
321 |
ctcgtgcctacacttatgaacatcagcataaccttcttcttggtttggctgctaaaatggctgaagaaccattcagacttctggtgagatgttactcata |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39950803 |
ctcgtgcctacacttatgaacatcagcataaccttcttcttggtttggctgctaaaatggctgaagaaccattcagacttctggtgagatgttactcata |
39950902 |
T |
|
| Q |
421 |
gagtagtatagagttgccttccgttgcaatatcgt |
455 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
39950903 |
gagtagtatagagttgccttccgttgcaatatcgt |
39950937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 458 - 580
Target Start/End: Original strand, 39951238 - 39951358
Alignment:
| Q |
458 |
atagcttttggtttttagctgtggcttttacagtaagaattgatgcgtatttctttatctgacgatactgagttttggttgcattcatagctgatcctgg |
557 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39951238 |
atagcttttg-tttttagctgtggcttttacagtaagacttgatgcgcatttctt-atctgacgatactgagttttggttgcagtcatagctgatcctgg |
39951335 |
T |
|
| Q |
558 |
agggggtatcttctatactgatc |
580 |
Q |
| |
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||| ||||||||| |||||||| |
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| T |
39951336 |
aggtggtatcttcattactgatc |
39951358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 88 - 453
Target Start/End: Original strand, 46401919 - 46402298
Alignment:
| Q |
88 |
aattgataacttatgattgttttttcaattgatattcacttaccaaannnnnnnnnnngtttatttgcaatgtagtcgacctgaccgaattgtcgccata |
187 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46401919 |
aattgataacttatgattgttttttcaattgatattcacttaccaaagtttttat---gtttatttgcaatgtagtcgacctgaccgaattgttgccata |
46402015 |
T |
|
| Q |
188 |
gctgagaggtttggaatggatccatgggctgtactggacaatgtaagtttcctttgtttcat-----------aa------cctgattgtgaatattttg |
270 |
Q |
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|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||| |
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| T |
46402016 |
gctgagaggtttggcatggatccaggggctgtactagacaatgtaagtttcctttgattcatgtatgtatcataattggttcctgattgtgaatatttta |
46402115 |
T |
|
| Q |
271 |
gtgctgactgcttaccagtttctgtatgtgaatgcacaagattatctatgctcgtgcctacacttatgaacatcagcataaccttcttcttggtttggct |
370 |
Q |
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||||||| ||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| |||||||||||| |
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| T |
46402116 |
gtgctgattgcttaccaatttctgtttgtgactgcacaagattatctatgcccgtgcctacacttatgagcatcagtataaccttctccttggtttggct |
46402215 |
T |
|
| Q |
371 |
gctaaaatggctgaagaaccattcagacttctggtgagatgttactcatagagtagtatagagttgccttccgttgcaatatc |
453 |
Q |
| |
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| T |
46402216 |
gctaaaatggctgaagaaccattcagacttctggtgagatgttactcatagagtggtatagagtttccttccgttgcaatatc |
46402298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 17732090 - 17732153
Alignment:
| Q |
22 |
actaagctgaactaaaagggcaatcttcctgttcaaccaaagagaaatccgcgggctgtttttt |
85 |
Q |
| |
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|||||||||||||||||| | |||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
17732090 |
actaagctgaactaaaagtgaaatcttcctgttcaaccaaagagaaatctgcaggctgtttttt |
17732153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 318 - 425
Target Start/End: Complemental strand, 17113787 - 17113678
Alignment:
| Q |
318 |
atgctcgtgcctacacttatgaacatcagcataaccttcttcttggtttggctgctaaa--atggctgaagaaccattcagacttctggtgagatgttac |
415 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||||| |||||||||| ||||| | ||| | |||||||||||||| |||||||||||| |||| |
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| T |
17113787 |
atgctcgtgcctaaacttatgagcatcaatataaccttctccttggtttgggtgctatataatgtttaaagaaccattcagatttctggtgagatattac |
17113688 |
T |
|
| Q |
416 |
tcatagagta |
425 |
Q |
| |
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| || ||||| |
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|
| T |
17113687 |
taatggagta |
17113678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 580
Target Start/End: Original strand, 46402664 - 46402732
Alignment:
| Q |
512 |
ttatctgacgatactgagttttggttgcattcatagctgatcctggagggggtatcttctatactgatc |
580 |
Q |
| |
|
|||| ||| |||||||||||||||||||| ||||||||||||| ||||| ||||| ||| |||||||| |
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|
| T |
46402664 |
ttatgtgatgatactgagttttggttgcagtcatagctgatccaggaggtggtatgttcattactgatc |
46402732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 271 - 453
Target Start/End: Complemental strand, 27743707 - 27743521
Alignment:
| Q |
271 |
gtgctgactgcttaccagtttctgtatgtgaatgcacaagattatctatgctcg-tgcctacacttatgaacatcag----cataaccttcttcttggtt |
365 |
Q |
| |
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||||||| ||||||| | ||||||| | ||| ||||||||| ||||||||||| ||||||||||||||| || ||| |||||||||| ||||||| |
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|
| T |
27743707 |
gtgctgattgcttacta-tttctgtttttgactgcacaagagcatctatgctcggtgcctacacttatgagcagcagtatatataaccttctccttggtt |
27743609 |
T |
|
| Q |
366 |
tggctgctaaaatggctgaagaaccattcagacttctggtgagatgttactcatagagtagtatagagttgccttccgttgcaatatc |
453 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||| |||||||| |||| ||||||||||| |
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|
| T |
27743608 |
tggctgctaaaatgtctgaagaaccattcatacttctggtgagatgttactgatcgagtagaatagagttatcttctgttgcaatatc |
27743521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 27743841 - 27743749
Alignment:
| Q |
158 |
tgtagtcgacctgaccgaattgtcgccatagctgagaggtttggaatggatccatgggctgtactggacaatgtaagtttcctttgtttcata |
250 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||||||||||||||| ||| |||| ||||||| | ||||||||| ||| ||||||||||| |
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|
| T |
27743841 |
tgtagtcggtctgaccgaaatgttcccatagctgagaggtttgggatgaatcctgcggctgtattagacaatgtattcttcatttgtttcata |
27743749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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