View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0018-INSERTION-4 (Length: 548)
Name: NF0018-INSERTION-4
Description: NF0018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0018-INSERTION-4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 79 - 542
Target Start/End: Complemental strand, 26357948 - 26357475
Alignment:
| Q |
79 |
agaacctattttgctgcttgatctttatctctagaatctttatgataacattgtgaaggatggattaacctgggagttgtttctggcatatatttgaaat |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357948 |
agaacctattttgctgcttgatctttatctctagaatctttatgataacattgtgaaggatggattaacctgggagttgtttctggcatatatttgaaat |
26357849 |
T |
|
| Q |
179 |
tgtcttctcagtccatccaacacagtgatttggatattactagcatacatgtttgatatcagtgtt----------gtacaaccaacttttgatttggta |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
26357848 |
tgtcttctcagtccatccaacacagtgatttggatattactagcttacatgtttgatatcagtgtttatcagtgttgtacaaccaacttttgatttggta |
26357749 |
T |
|
| Q |
269 |
tgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttgg |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26357748 |
tgttagtataacaattggatgctacccttttgatttggagtgttagtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttgg |
26357649 |
T |
|
| Q |
369 |
ttatgtataattgttgctcaatttctgttccctgctcaacttaattgtactatatcactcgctatgcataactgttgctctctgtttatttacacaagcc |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357648 |
ttatgtataattgttgctcaatttctgttccctgctcaacttaattgtactatatcactcgctatgcataactgttgctctctgtttatttacacaagcc |
26357549 |
T |
|
| Q |
469 |
atttttctgtcttttttctttgtccaaattcctaattttgcatctacttgaacttgttattattgtggcttata |
542 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26357548 |
atttttctgtcttttttccttgtccaaattcctaattttgcatctacttgaacttgttattattgtggcttata |
26357475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 79 - 406
Target Start/End: Complemental strand, 51759766 - 51759446
Alignment:
| Q |
79 |
agaacctattttgctgcttgatctttatctctagaatctttatgataacattgtgaaggatggattaacctgggagttgtttctggcatatatttgaaat |
178 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| || ||| || | ||||||||||| |||||||||| | |||||||||||||| ||||||| |||| |
|
|
| T |
51759766 |
agaacctattttgctgcttgattttgatctctaaaagcttcatcgtgacattgtgaagtatggattaacttcggagttgtttctggtatatattcaaaat |
51759667 |
T |
|
| Q |
179 |
tgtcttctcagtccatccaacacagtgatttggatattactagcatacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtata |
278 |
Q |
| |
|
|||||||||| ||||| ||||| ||| |||| |||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
51759666 |
tgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgttagtata |
51759567 |
T |
|
| Q |
279 |
acaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttggttatgtataa |
378 |
Q |
| |
|
||| ||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||| |
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|
| T |
51759566 |
acagttggatgctgcccttttgatttagagtgttagtaatagcttgttgaatctttagatactgcatcagtt-------cttactcttggttatgtataa |
51759474 |
T |
|
| Q |
379 |
ttgttgctcaatttctgttccctgctca |
406 |
Q |
| |
|
|||||||| ||||| ||||||| ||||| |
|
|
| T |
51759473 |
ttgttgcttaatttatgttcccagctca |
51759446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 9e-93; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 79 - 409
Target Start/End: Complemental strand, 6685166 - 6684843
Alignment:
| Q |
79 |
agaacctattttgctgcttgatctttatctctagaatctttatgataacattgtgaaggatggattaacctgggagttgtttctggcatatatttgaaat |
178 |
Q |
| |
|
|||||| ||||||||| ||||| || ||||||| | ||| ||||| ||||||||||| |||||||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
6685166 |
agaaccaattttgctggttgattttgatctctaagagcttcatgatgacattgtgaagtatggattaacttgggagttgtttttggcatatattcaaaat |
6685067 |
T |
|
| Q |
179 |
tgtcttctcagtccatccaacacagtgatttggatattactagcatacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtata |
278 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| || |||||||| |
|
|
| T |
6685066 |
tgtcttctcagtccattcaacatagttatttggatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatattagtata |
6684967 |
T |
|
| Q |
279 |
acaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttggttatgtataa |
378 |
Q |
| |
|
||| ||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
6684966 |
acagttggatgctgcccttttgatttagagtgttaggtatagcttgttgaatctttaggtactgcatcagtt-------cttactcttggttatgtataa |
6684874 |
T |
|
| Q |
379 |
ttgttgctcaatttctgttccctgctcaact |
409 |
Q |
| |
|
||||||| ||||| ||||||| |||||||| |
|
|
| T |
6684873 |
ttgttgcataatttatgttcccagctcaact |
6684843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 151 - 399
Target Start/End: Complemental strand, 30822069 - 30821828
Alignment:
| Q |
151 |
ggagttgtttctggcatatatttgaaattgtcttctcagtccatccaacacagtgatttggatattactagcatacatgtttgatatcagtgttgtacaa |
250 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| ||||| ||||| ||| ||||||||||||||||| ||||||| |||||||||| |||||||| |
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|
| T |
30822069 |
ggagttttttctggcatatattcaaaattgtcttctcaatccattcaacatagttatttggatattactagcttacatgtatgatatcagttttgtacaa |
30821970 |
T |
|
| Q |
251 |
ccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagtt |
350 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||| || ||||||| |
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|
| T |
30821969 |
ccaacttttgatttggaatgttagtataacagttggatgctgcccttttgattaagagtgttagtaatagcttgttgaatatttaggtactgaatcagtt |
30821870 |
T |
|
| Q |
351 |
cttagttcttactcttggttatgtataattgttgctcaatttctgttcc |
399 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
30821869 |
-------cttactcttggttatttataattgttgcttaatttctgttcc |
30821828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 162 - 409
Target Start/End: Complemental strand, 30812796 - 30812556
Alignment:
| Q |
162 |
tggcatatatttgaaattgtcttctcagtccatccaacacagtgatttggatattactagcatacatgtttgatatcagtgttgtacaaccaacttttga |
261 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||| |||||| ||| |||||||||||| |||||| |
|
|
| T |
30812796 |
tggcatttattcaaaattgtcttctcagtccattcaacatagttatttggatattactagcttacatgtatgatattagttttgtacaaccaatttttga |
30812697 |
T |
|
| Q |
262 |
tttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagttcttagttctta |
361 |
Q |
| |
|
|||| |||||||||||||| ||||||| | |||| |||||| ||||||| |||||||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
30812696 |
tttgaaatgttagtataacagttggatgttgccctgttgattaagagtgttagtaatagcttgttgaatctttaggtactgaatcagtt-------ctta |
30812604 |
T |
|
| Q |
362 |
ctcttggttatgtataattgttgctcaatttctgttccctgctcaact |
409 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
30812603 |
ctcttggttatttataattgttgcttaatttatgttcccagctcaact |
30812556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 196 - 409
Target Start/End: Complemental strand, 12592727 - 12592521
Alignment:
| Q |
196 |
caacacagtgatttggatattactagcatacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctaccc |
295 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| ||| |
|
|
| T |
12592727 |
caacatagttatttggatattactagcttacatgtatgttatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgctgccc |
12592628 |
T |
|
| Q |
296 |
ttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttggttatgtataattgttgctcaatttctg |
395 |
Q |
| |
|
||||||||| | |||| |||||||||| ||||||||||||||| | |||| | ||||| ||||||||||||||||||| ||||| |||||||| |
|
|
| T |
12592627 |
ttttgatttagtttgttagtaatagcttattgaatctttaggtactacatc-------aattctttctcttggttatgtataattattgcttaatttctg |
12592535 |
T |
|
| Q |
396 |
ttccctgctcaact |
409 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
12592534 |
ttcccagctcaact |
12592521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 130 - 409
Target Start/End: Complemental strand, 27810826 - 27810568
Alignment:
| Q |
130 |
tgtgaaggatggattaacctgggagttgtttctggcatatatttgaaattgtcttctcagtccatccaacacagtgatttggatattac--tagcataca |
227 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||| |||||| ||||||| |||||||||||| ||||| ||| ||||||||||||| |||| |||| |
|
|
| T |
27810826 |
tgtgaagtatggattaacttgggagttttttctggcttatattcaaaattgtattctcagtccattcaacatagttatttggatattactatagcttaca |
27810727 |
T |
|
| Q |
228 |
tgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttg |
327 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||| |||||| || |||||||||||| ||||||| |||||||||||||| |
|
|
| T |
27810726 |
tgtatgatatcagttttgtacaaccaacttttgatttggaatgtta----------------ctgcccttttgatttagagtgttagtaatagcttgttg |
27810643 |
T |
|
| Q |
328 |
aatctttaggtattgcatcagttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
409 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
27810642 |
aatctttaggtactgcatc-------agttcttactcttggttatttataattgttgcttaatttctgttcccatctcaact |
27810568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 2942525 - 2942576
Alignment:
| Q |
358 |
cttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
409 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
2942525 |
cttactcttggttatgtatgattgttgcttaatttctgttcccagctcaact |
2942576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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