View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0018-INSERTION-6 (Length: 595)
Name: NF0018-INSERTION-6
Description: NF0018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0018-INSERTION-6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 6 - 589
Target Start/End: Original strand, 33141296 - 33141880
Alignment:
| Q |
6 |
cagttttatgtacccttaaggaatgtagccacgagtcttgcattaccgttgatcacagtgagatcacaaatgcaactagaataaggctatttatcaactt |
105 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | | |
|
|
| T |
33141296 |
cagttttatgtatccttaagcaatgtagccatgagtcttgcattatcgttgatcacagtgagatcacaaatgcaactagaataaggctatttgtcaccat |
33141395 |
T |
|
| Q |
106 |
tgcattacattgttatatcaataaagtgttatttaagttatctgttcttaaggtttcacatttgagatttttaactatacttcaacnnnnnnntgtaaat |
205 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33141396 |
tgtattacactgttatatcaataaagtgttattttagttatctgttcttaaggtttcacatttgagatttttaactatacttcaacaaaaaaatgtaaat |
33141495 |
T |
|
| Q |
206 |
tatgtatgtggcatgcattttgcacgtcatgaccatggttgtaattataagtaggaataagggactttcaagacaaaggttacctattttaaccaagaat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33141496 |
tatgtatgtggcatgcattttgcacgtcatgaccatggttgtaattataagtaggaataagggactttcaagacaaaggttacctattttaaccaagaat |
33141595 |
T |
|
| Q |
306 |
gataaacagtttgttgaatctaaagaaggataatctcgtctcaatcaaaacaaactcagacatcatatgcaggggacataacta-tatcataagttcata |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33141596 |
gataaacagtttgttgaatctaaagaaggataatctca-ctcaatcaaaacaaactcagacatcatatgcaggggacataactaatatcataagttcata |
33141694 |
T |
|
| Q |
405 |
actcagaatga-ggcttaatgagcagaatgaactctccagaggagactaaacaactaaatacataaatccaaaataattcatgaacaaggtattgacaga |
503 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33141695 |
actcagcatgaaggcttaatgagcagaattaactctccagaggagactaaacaactaaatacataaatccaaaataattcatgaacaaggtattgacaga |
33141794 |
T |
|
| Q |
504 |
taatatatagaatcgtgacttcttttcttctaatcatgcaagtagaatatcaagtactagcttgagttgtagtattataagatatt |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
33141795 |
taatatatagaatcgtgacttcttttcttctaatcatgcaagtagaatatcaagtaccagcttaagttgtagtattatgagatatt |
33141880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 33286857 - 33286769
Alignment:
| Q |
10 |
tttatgtaccc-ttaaggaatgtagccacgagtcttgcattaccgttgatcacagtgagatcacaaatgcaactagaataaggctattt |
97 |
Q |
| |
|
||||||||||| ||| || ||||||||| ||||| ||||||| |||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
33286857 |
tttatgtaccccttatgggatgtagccatgagtcctgcattattgttgatcacagtaagatcatgaatgcaactagaataaggctattt |
33286769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 454
Target Start/End: Complemental strand, 29661927 - 29661895
Alignment:
| Q |
422 |
atgagcagaatgaactctccagaggagactaaa |
454 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
29661927 |
atgagcagaatgaactctcccgaggagactaaa |
29661895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 567 times since January 2019
Visitors: 1098