View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0018-INSERTION-7 (Length: 633)
Name: NF0018-INSERTION-7
Description: NF0018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0018-INSERTION-7 |
 | |
|
| [»] scaffold0308 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 212 - 547
Target Start/End: Original strand, 18445541 - 18445874
Alignment:
| Q |
212 |
atgatgagggccacgatagaatggagggagggcttgcttgctgcccattttgatgnnnnnnnnnnnnatgttgtaataaaagtgtaagggaccaattctg |
311 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18445541 |
atgatgagggccacaatggaatggagggagggcttgcttgctgcccattttgatgttttgtatttttatgttgtaataaaagtgtaagggaccaattctg |
18445640 |
T |
|
| Q |
312 |
gccaaaaacacttaagtttgaatttctagtgtgttttatccattttaaagctttcaacagctttaaatggcgtgcttgctttattttagaaagaaaataa |
411 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18445641 |
gccaaaaacact-aagtttgaatttctagtgtgttttatccattttaaagctttcaaaagctttaaatggcgtgcttgctttattgtagaaagaaaataa |
18445739 |
T |
|
| Q |
412 |
tatgctgaatcaagtatagtgaaaagaaatcaagaacattaatggggagggagaaaaatagcacatgacatgaaaggaaagaaggaagtggtgctgccac |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18445740 |
tatgctgaatcaagtatagtgaaaagaaatcaagaacattaat-gggagggagaaaaatatcacatgacatgaaaggaaagaaggaagtggtgctgccac |
18445838 |
T |
|
| Q |
512 |
acattaaagcacaatgaattgttttctttcagccca |
547 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18445839 |
aaattaaagcacaatgaattgttttctttcagccca |
18445874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 551 - 633
Target Start/End: Original strand, 18445845 - 18445926
Alignment:
| Q |
551 |
aagcacaatgaattggtttctttcagcccattcattgaggaaatcagatgggacacgttttgagcatcttgagagccgcccca |
633 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18445845 |
aagcacaatgaattgttttctttcagcccactcattgaggaaatcagat-ggacacgttttgagcatcttgagagccgcccca |
18445926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 381
Target Start/End: Complemental strand, 18774948 - 18774846
Alignment:
| Q |
279 |
atgttgtaataaaa-gtgtaagggaccaattctgg-ccaaaaacacttaagtttgaatttctagtgtgttttatccattttaaagctttcaacagcttta |
376 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||| ||||||||||| |||| || | | | |||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
18774948 |
atgttgtaataaaaagtgtaagagaccaattttggtccaaaaacact-aagtatggttattttgtgtgtttaatccattttaaagcttccaa-agctttg |
18774851 |
T |
|
| Q |
377 |
aatgg |
381 |
Q |
| |
|
||||| |
|
|
| T |
18774850 |
aatgg |
18774846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 212 - 547
Target Start/End: Complemental strand, 16020190 - 16019857
Alignment:
| Q |
212 |
atgatgagggccacgatagaatggagggagggcttgcttgctgcccattttgatgnnnnnnnnnnnnatgttgtaataaaagtgtaagggaccaattctg |
311 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16020190 |
atgatgagggccacaatggaatggagggagggcttgcttgctgcccattttgatgttttttatttttatgttgtaataaaagtgtaagggaccaattctg |
16020091 |
T |
|
| Q |
312 |
gccaaaaacacttaagtttgaatttctagtgtgttttatccattttaaagctttcaacagctttaaatggcgtgcttgctttattttagaaagaaaataa |
411 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16020090 |
gccaaaaacact-aattttgaatttctagtgtgttttatccattttaaagctttcaacagctttaaatggtgtgcttgctttattttagaaagaaaataa |
16019992 |
T |
|
| Q |
412 |
tatgctgaatcaagtatagtgaaaagaaatcaagaacattaatggggagggagaaaaatagcacatgacatgaaaggaaagaaggaagtggtgctgccac |
511 |
Q |
| |
|
|| | ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16019991 |
tacgttgaatcaagtacagcgaaaagaaatcaagaacattaat-gggagggagaaaaatagcacatgacatgaaaggaaagaatgaagtggtgctgccac |
16019893 |
T |
|
| Q |
512 |
acattaaagcacaatgaattgttttctttcagccca |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
16019892 |
acattaaagcacaatgaattgttttctttcagccca |
16019857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 546 - 633
Target Start/End: Complemental strand, 16019891 - 16019805
Alignment:
| Q |
546 |
cattcaagcacaatgaattggtttctttcagcccattcattgaggaaatcagatgggacacgttttgagcatcttgagagccgcccca |
633 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16019891 |
cattaaagcacaatgaattgttttctttcagcccacacattgaggaaatcagat-ggacacgttttgagcatcttgagagccgcccca |
16019805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 213 - 516
Target Start/End: Original strand, 16375 - 16676
Alignment:
| Q |
213 |
tgatgagggccacgatagaatggagggagggcttgcttgctgcccattttgatgnnnnnnnnnnnnatgttgtaataaaagtgtaagggaccaattctgg |
312 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| |
|
|
| T |
16375 |
tgatgagggcaacgatggaatggagggagggcttgcttgctgcccattttgatgttttttatttttatgttgtaataaaagtgtaaggaaccaattatgg |
16474 |
T |
|
| Q |
313 |
ccaaaaacacttaagtttgaatttctagtgtgttttatccattttaaagctttcaacagctttaaatggcgtgcttgctttattttagaaagaaaataat |
412 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16475 |
ccaaaaacact-aagtttgaatttatagtgtgttttatccattttaaagctttcaacagatttaaatggcgtgcttgctttattttagaaagaaaataat |
16573 |
T |
|
| Q |
413 |
atgctgaatcaagtatagtgaaaagaaatcaagaacattaatggggagggagaaaaatagcacatgacatgaaaggaaagaaggaagtggtgctgccaca |
512 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16574 |
atgatgaatcaagtatagtgaaaagaaatcaagaacattaat-gggagggagaaaaatagcacatgacatgaaaggaaagaaggaagtggtgctgccaca |
16672 |
T |
|
| Q |
513 |
catt |
516 |
Q |
| |
|
|||| |
|
|
| T |
16673 |
catt |
16676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 33068302 - 33068510
Alignment:
| Q |
8 |
aacccttactcttgccatgacagtttttgaatattccagcacaagcagactgccctagattgcgtagaattgtgccatctctccttagtggacctcaata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
33068302 |
aacccttactcttgccatgacagtttttgaatattccagcacaagcagactgccctagattgcgtagacttgtgccatctcaacttagtggacctcaata |
33068401 |
T |
|
| Q |
108 |
agggac----tcattatagccgatcactattcttcatttggaaattttgattttattttgctaatttaatcacattaactcttttaacttttctccttcc |
203 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||| ||| |
|
|
| T |
33068402 |
agtgactcattcattatagccgatcactattcttcgtttggaaattttgattttattttgccaatttaaccatattaactc-tttaacttttctccctcc |
33068500 |
T |
|
| Q |
204 |
ttaattagat |
213 |
Q |
| |
|
|||||||||| |
|
|
| T |
33068501 |
ttaattagat |
33068510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 279 - 450
Target Start/End: Complemental strand, 11127055 - 11126885
Alignment:
| Q |
279 |
atgttgtaataaaagtgtaagggaccaattctggccaaaaacacttaagtttgaatttctagtgtgttttatccattttaaagctttcaacagctttaaa |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
11127055 |
atgttgtaataaaagtgtaagggaccaattccgaccaaaaaca-ttaagtttgagtttctagtgtgttttatccattttaaagctttcaaaagctttata |
11126957 |
T |
|
| Q |
379 |
tggcgtgcttgctttattttagaaagaaaataatatgctgaatcaagtatagtgaaaagaaatcaagaacat |
450 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||| |||||||| || |||||||||||||||| ||||| |
|
|
| T |
11126956 |
tggtgtgcttgctttattttataaagaaaataatatgatgaatcaaatagagtgaaaagaaatcaaaaacat |
11126885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 11126888 - 11126818
Alignment:
| Q |
479 |
acatgaaaggaaagaaggaagtggtgctgccacacat--taaagcacaatgaattgttttctttcagccca |
547 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11126888 |
acatgaaaggaaaggagcaagtggtgctgccactcatattaaagcacaatgaattgttttctttcagccca |
11126818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 633
Target Start/End: Complemental strand, 11126847 - 11126766
Alignment:
| Q |
551 |
aagcacaatgaattggtttctttcagcccattcattgaggaaatcagatgggacacgttttgagcatcttgagagccgcccca |
633 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| ||||| || ||| ||||||| |||||| || ||||||||||| |
|
|
| T |
11126847 |
aagcacaatgaattgttttctttcagcccacacattgatgaaat-tcattggaaacgttttcagcatcatgggagccgcccca |
11126766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 381
Target Start/End: Complemental strand, 22821941 - 22821839
Alignment:
| Q |
279 |
atgttgtaataaaa-gtgtaagggaccaattctggcc-aaaaacacttaagtttgaatttctagtgtgttttatccattttaaagctttcaacagcttta |
376 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||| | ||| ||||||||| |||| ||| | | | |||||||| |||||||||||||||| ||| ||||||| |
|
|
| T |
22821941 |
atgttgtaataaaaagtgtaagagacctattttagcccaaaaacact-aagtatgattattttgtgtgtttaatccattttaaagcttccaa-agcttta |
22821844 |
T |
|
| Q |
377 |
aatgg |
381 |
Q |
| |
|
||||| |
|
|
| T |
22821843 |
aatgg |
22821839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 22298987 - 22299041
Alignment:
| Q |
212 |
atgatgagggccacgatagaatggagggagggcttgcttgctgcccattttgatg |
266 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22298987 |
atgatgagggccacgatggaatggagggagggcttgcttgctgcccattttgatg |
22299041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 14576247 - 14576193
Alignment:
| Q |
212 |
atgatgagggccacgatagaatggagggagggcttgcttgctgcccattttgatg |
266 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14576247 |
atgatgagggccacggtggaatggagggagggcttgcttgctgcccattttgatg |
14576193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 381
Target Start/End: Original strand, 16156466 - 16156568
Alignment:
| Q |
279 |
atgttgtaataaaa-gtgtaagggaccaattctggcc-aaaaacacttaagtttgaatttctagtgtgttttatccattttaaagctttcaacagcttta |
376 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||||| ||||||||| |||| || | | | |||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
16156466 |
atgttgtaataaaaagtgtaagagaccaattttggcccaaaaacact-aagtatggttattttgtgtgtttaatccattttaaagcttccaa-agctttg |
16156563 |
T |
|
| Q |
377 |
aatgg |
381 |
Q |
| |
|
||||| |
|
|
| T |
16156564 |
aatgg |
16156568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 381
Target Start/End: Original strand, 12639022 - 12639124
Alignment:
| Q |
279 |
atgttgtaataaaa-gtgtaagggaccaattctggcc-aaaaacacttaagtttgaatttctagtgtgttttatccattttaaagctttcaacagcttta |
376 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| ||||||||| |||| || | | | |||||||| |||||||||||||||| ||| ||||||| |
|
|
| T |
12639022 |
atgttgtaataaaaagtgtaagagaccaattctggcccaaaaacact-aagtatggttattttgtgtgtttaatccattttaaagcttccaa-agcttta |
12639119 |
T |
|
| Q |
377 |
aatgg |
381 |
Q |
| |
|
||||| |
|
|
| T |
12639120 |
aatgg |
12639124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 380
Target Start/End: Original strand, 9343890 - 9343980
Alignment:
| Q |
289 |
aaaagtgtaagggaccaattctggcc-aaaaacacttaagtttgaatttctagtgtgttttatccattttaaagctttcaacagctttaaatg |
380 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| |||| || | | | |||||||| |||||||||||||||| ||| ||||||||||| |
|
|
| T |
9343890 |
aaaagtgtaagggaccaattttggcccaaaaacact-aagtgtggttattttgtgtgtttaatccattttaaagcttccaa-agctttaaatg |
9343980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 381
Target Start/End: Original strand, 11475075 - 11475177
Alignment:
| Q |
279 |
atgttgtaataaaa-gtgtaagggaccaattctgg-ccaaaaacacttaagtttgaatttctagtgtgttttatccattttaaagctttcaacagcttta |
376 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||| ||||||||||| |||| || | | | |||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
11475075 |
atgttgtaataaaaagtgtaagagaccaattttggtccaaaaacact-aagtatggttattttgtgtgtttaatccattttaaagcttccaa-agctttg |
11475172 |
T |
|
| Q |
377 |
aatgg |
381 |
Q |
| |
|
||||| |
|
|
| T |
11475173 |
aatgg |
11475177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 25014385 - 25014437
Alignment:
| Q |
35 |
tgaatattccagcacaagcagactgccctagattgcgtagaattgtgccatct |
87 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| | |||| ||||| ||||| |
|
|
| T |
25014385 |
tgaatattccagcacaagcaaactgccctggatttcttagagttgtgtcatct |
25014437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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