View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0018-INSERTION-8 (Length: 588)
Name: NF0018-INSERTION-8
Description: NF0018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0018-INSERTION-8 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 456
Target Start/End: Original strand, 14192295 - 14192743
Alignment:
| Q |
8 |
cttacccaggggagaaacgagctaccaccaagtccaattgatggtaggcaataaatggcaatacatggacaggtttctgcgtcaagaaaaccagcagcat |
107 |
Q |
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| T |
14192295 |
cttacccaggggagaaacgaactaccgccaagtccaattgatggtaggcattaaatggcaatacatgaacaggtttctgcttcaagaaaaccagcagaat |
14192394 |
T |
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| Q |
108 |
gaaccagaactattcatgacaatgttaagggcatgtaacgtagatattcccatatttgaaatagacacccgcgcaagctatgatgctagcatcttaggct |
207 |
Q |
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| T |
14192395 |
gtaccaggaacattcgacacaaggttaagtgcatgtagcgaagatattcccatatttgaaatagacatccgcgcaagctatgatggtagcatcttaggtt |
14192494 |
T |
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| Q |
208 |
cagaattaactgcagatgttatcgggagaacaatgatattggatggttgttttctgttacagtttctcagtaaacttaatcagccagcaatagatgccga |
307 |
Q |
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| T |
14192495 |
cagaattaactacagatgttatcgggagaaaaatgatattggatggttgttttctgttacagcttctcagtagacttgaacacccaacaatagatcccca |
14192594 |
T |
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| Q |
308 |
agacccaatatttgaaaccagggaaaagatgtgtgctgctgtgaacgacatcacattgcttgagaaccaaatacccttcattgttctcaagaagttatac |
407 |
Q |
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| T |
14192595 |
agacccaatatttgaaaccagggaaaagatgtgtgctgctgtgaacgacatcacattgcttgagaaccaaatacccttcattgttctcaagaagttatac |
14192694 |
T |
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| Q |
408 |
aggaaaaccttgggcgaaaattttgtacccgaggtcgatcacccggttg |
456 |
Q |
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| T |
14192695 |
aggaaaaccatcggcgaaagatttgtacccgagcacgataacccggttg |
14192743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 18521499 - 18521560
Alignment:
| Q |
351 |
aacgacatcacattgcttgagaaccaaatacccttcattgttctcaagaagttatacaggaa |
412 |
Q |
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| T |
18521499 |
aacgatatcacaatgcttgagaaccaaatacccttcattgttctcaagaagttgtataggaa |
18521560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 588
Target Start/End: Original strand, 14192871 - 14192917
Alignment:
| Q |
542 |
ggttgctcaatatgtggaggtctggaacgatcatcgggttgctagaa |
588 |
Q |
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| T |
14192871 |
ggttgctcaacatgtgcaggtttggaacgatcatcgggttgctagaa |
14192917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 4591021 - 4591058
Alignment:
| Q |
364 |
tgcttgagaaccaaatacccttcattgttctcaagaag |
401 |
Q |
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| T |
4591021 |
tgcttgagaaccaaattcccttcattattctcaagaag |
4591058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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