View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0018-INSERTION-9 (Length: 380)
Name: NF0018-INSERTION-9
Description: NF0018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0018-INSERTION-9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 380
Target Start/End: Complemental strand, 27694015 - 27693643
Alignment:
| Q |
8 |
caacattcccactccccgtcctcaaaacaccctcgacatcaccatgttccgaggaattcgtcatcgcagccgcaccaccaccatcattcaccaccagtgg |
107 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27694015 |
caacattcccactccccgtcctcaaaacgccctcgacatcgccatgttctgaggaattcgtcatcgcagccgcaccaccaccatcattcaccaccagtgg |
27693916 |
T |
|
| Q |
108 |
actaccctgttcatcccgatgattatcttgctcgttagacccaatgatcctaattgaaacctcaccatcgttaggggcagaatcgggaattggttgatgt |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27693915 |
actaccctgttcatctcgatgattatcttgctcgttagacccaatgatcctaattgaaacctcaccatcgttaggggcagaatcgggaattggttgatgt |
27693816 |
T |
|
| Q |
208 |
tgctggtttgacctcgccggaagaataccggaatattccaacagcgctgataacggtgcttgaattatgcttgcagccgacgggaatccatatcttctcg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27693815 |
tgctggtttgacctcgccggaagaataccggaatattccaacagcgctgataacggtgcttgaattatgcttgcagccgacgggaatccatatcttctcg |
27693716 |
T |
|
| Q |
308 |
atgatgaagatgatgctccgttcccttccattgacgtgaaatcccaaaccctaattcgaaatcatgtaaaaaa |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27693715 |
atgatgaagatgatgctccgttcccttccattgacgtgaaatcccaaaccctaattcgaaatcatgtaaaaaa |
27693643 |
T |
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