View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0021-INSERTION-1 (Length: 504)

Name: NF0021-INSERTION-1
Description: NF0021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0021-INSERTION-1
NF0021-INSERTION-1
[»] chr4 (25 HSPs)
chr4 (273-504)||(49378167-49378393)
chr4 (8-206)||(49378460-49378659)
chr4 (443-498)||(19850136-19850191)
chr4 (443-497)||(43386538-43386592)
chr4 (446-497)||(50605462-50605513)
chr4 (443-497)||(44792863-44792917)
chr4 (445-497)||(21436313-21436365)
chr4 (445-497)||(45674310-45674362)
chr4 (443-497)||(9469432-9469485)
chr4 (443-497)||(12790228-12790282)
chr4 (448-497)||(52812976-52813025)
chr4 (443-497)||(7505428-7505482)
chr4 (443-497)||(52705597-52705651)
chr4 (444-497)||(49820383-49820436)
chr4 (447-494)||(36543322-36543369)
chr4 (443-497)||(79764-79818)
chr4 (447-497)||(22183771-22183821)
chr4 (443-497)||(25133937-25133991)
chr4 (443-497)||(48977008-48977062)
chr4 (443-497)||(55892753-55892807)
chr4 (443-496)||(48732039-48732092)
chr4 (443-483)||(28266835-28266875)
chr4 (445-497)||(40797160-40797212)
chr4 (445-497)||(53369068-53369120)
chr4 (445-493)||(54742089-54742137)
[»] chr2 (8 HSPs)
chr2 (443-497)||(36538081-36538135)
chr2 (444-497)||(20986069-20986122)
chr2 (445-497)||(33830896-33830948)
chr2 (443-497)||(27633146-27633200)
chr2 (443-497)||(26435771-26435825)
chr2 (443-499)||(33164632-33164688)
chr2 (445-497)||(44741378-44741430)
chr2 (445-482)||(34116851-34116888)
[»] chr5 (9 HSPs)
chr5 (443-497)||(3805455-3805509)
chr5 (443-497)||(32157467-32157521)
chr5 (443-494)||(38523335-38523386)
chr5 (443-497)||(29322067-29322121)
chr5 (443-497)||(1841059-1841113)
chr5 (443-497)||(27905484-27905538)
chr5 (448-497)||(18879629-18879678)
chr5 (443-483)||(10493383-10493423)
chr5 (443-499)||(22921442-22921498)
[»] chr7 (21 HSPs)
chr7 (444-497)||(666298-666351)
chr7 (437-497)||(26215715-26215775)
chr7 (443-497)||(5776647-5776701)
chr7 (443-497)||(15433633-15433687)
chr7 (443-497)||(36926413-36926467)
chr7 (445-497)||(7443835-7443887)
chr7 (443-497)||(43052286-43052340)
chr7 (443-497)||(45174641-45174695)
chr7 (444-497)||(5795576-5795629)
chr7 (445-497)||(3931431-3931483)
chr7 (445-497)||(37333703-37333755)
chr7 (443-497)||(388431-388485)
chr7 (442-493)||(37106149-37106200)
chr7 (442-493)||(42012264-42012315)
chr7 (445-499)||(223023-223077)
chr7 (443-481)||(17608032-17608070)
chr7 (443-497)||(30918934-30918988)
chr7 (443-497)||(42071524-42071578)
chr7 (444-497)||(17026080-17026133)
chr7 (444-489)||(32239473-32239518)
chr7 (443-483)||(27232479-27232519)
[»] chr6 (7 HSPs)
chr6 (444-497)||(6998581-6998634)
chr6 (443-497)||(7957058-7957112)
chr6 (444-497)||(4442077-4442130)
chr6 (443-497)||(18961849-18961903)
chr6 (443-497)||(7436704-7436758)
chr6 (447-497)||(10346220-10346270)
chr6 (443-483)||(10962518-10962558)
[»] chr3 (9 HSPs)
chr3 (443-496)||(52198780-52198833)
chr3 (443-497)||(39471161-39471215)
chr3 (443-497)||(41609318-41609372)
chr3 (438-497)||(38644306-38644365)
chr3 (443-497)||(39133782-39133836)
chr3 (447-499)||(32688567-32688619)
chr3 (443-486)||(23206993-23207036)
chr3 (443-497)||(5418047-5418101)
chr3 (443-497)||(30740736-30740790)
[»] chr8 (6 HSPs)
chr8 (443-497)||(9413346-9413400)
chr8 (444-483)||(22930940-22930979)
chr8 (443-493)||(27189639-27189689)
chr8 (448-497)||(11161087-11161136)
chr8 (445-493)||(33280724-33280772)
chr8 (443-483)||(34515559-34515599)
[»] scaffold0316 (1 HSPs)
scaffold0316 (443-497)||(18714-18768)
[»] chr1 (15 HSPs)
chr1 (443-497)||(24470596-24470650)
chr1 (443-483)||(44595833-44595873)
chr1 (443-486)||(37441911-37441954)
chr1 (443-497)||(29678186-29678240)
chr1 (443-497)||(32179337-32179391)
chr1 (443-497)||(36418524-36418578)
chr1 (443-497)||(47603491-47603545)
chr1 (443-493)||(14579117-14579167)
chr1 (443-493)||(23916135-23916185)
chr1 (443-497)||(28005739-28005793)
chr1 (443-497)||(35309012-35309066)
chr1 (443-497)||(38061701-38061755)
chr1 (443-483)||(5205206-5205246)
chr1 (445-497)||(24575306-24575358)
chr1 (445-497)||(45654449-45654501)
[»] scaffold0658 (1 HSPs)
scaffold0658 (443-497)||(6475-6529)
[»] scaffold0043 (1 HSPs)
scaffold0043 (443-483)||(16496-16536)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 273 - 504
Target Start/End: Complemental strand, 49378393 - 49378167
Alignment:
Q  273 gcttcaaatgaaa-gttgttttaagtagtttcatttgaaaatcatttttaataaatgattgattttgtttccggtaggtttctcaatcacagctcatatg 371  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||      ||||||||||||||||    
T  49378393 gcttcaaatgaaaagttgttttaagtagtttcatttgaaaataatttttaataaatgattgattttgtttccggtagg------aatcacagctcatatg 49378300  T
Q  372 taacggttcaattggtaagaaattaactaatactctcaaatatgtgagctccactctcactattggctatagctggaaatgagtcgagtcgaactgaacc 471  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||| |||||    
T  49378299 taatggttcaattggtaagaagttaactaatactctcaaatatgtgagctccactctcactattggctagggccggaaatgagtcgagtcgaaccgaacc 49378200  T
Q  472 tgtctgagctcggcttgactcgataaaattcca 504  Q
    ||||||||||||||| || ||||||| ||||||    
T  49378199 tgtctgagctcggctcgaatcgataagattcca 49378167  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 49378659 - 49378460
Alignment:
Q  8 gtttgatggtcaaaa-taagatggagatcaataagataaaagagttgaataaaaatatgacactattaggnnnnnnnaaaatccatttcaaaatttagac 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| |||||||    
T  49378659 gtttgatggtcaaaaataagatggagatcaataagataaaagagttgaataaaaatatgacactattaggtttttttaaaatccatttcaaattttagac 49378560  T
Q  107 aatttacaatgacattaagaaattatttgataccgtcattcggtgaaaaatccattatcgatttttattnnnnnnnntcacttttacgagttttcatttg 206  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||    
T  49378559 aatttacgatgacattaagaacttgtttgataccgtcattcggtgaaaaatccattatcgatttttattaaaaaaaatcacttttatgagttttcatttg 49378460  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 443 - 498
Target Start/End: Original strand, 19850136 - 19850191
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataaa 498  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  19850136 gctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataaa 19850191  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 43386538 - 43386592
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  43386538 gctggaaatgagtcgagtcgaactgaacctgtctgagctcgactcgactcgataa 43386592  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 50605462 - 50605513
Alignment:
Q  446 ggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  50605462 ggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataa 50605513  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 44792917 - 44792863
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  44792917 gctggaaatgagtcgagtcgaaccgaacctgtatgagctcggctcgactcgataa 44792863  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 21436313 - 21436365
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  21436313 tggaaatgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataa 21436365  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 45674310 - 45674362
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||| ||||||| |||||||||||| ||||||||||    
T  45674310 tggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataa 45674362  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 9469432 - 9469485
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  9469432 gctggaaatgagtcgagtcgatc-gaacctgtctgagctcggctcgactcgataa 9469485  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 12790282 - 12790228
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||| |||||||||||||||||| |||||||||||||||||||| || |||||||    
T  12790282 gctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgattcgataa 12790228  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 497
Target Start/End: Original strand, 52812976 - 52813025
Alignment:
Q  448 aaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  52812976 aaatgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataa 52813025  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 7505428 - 7505482
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||   |||| ||||||||||||||| ||||||||||    
T  7505428 gctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataa 7505482  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 52705597 - 52705651
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||   |||| ||||||||||||||| ||||||||||    
T  52705597 gctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataa 52705651  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 49820383 - 49820436
Alignment:
Q  444 ctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||| ||||||||||  ||||||| |||||||||||| ||||||||||    
T  49820383 ctggaaatgaatcgagtcgaatcgaacctgcctgagctcggctcgactcgataa 49820436  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 494
Target Start/End: Original strand, 36543322 - 36543369
Alignment:
Q  447 gaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcga 494  Q
    ||||||||||||||||||| |||| | ||||||||||||| |||||||    
T  36543322 gaaatgagtcgagtcgaaccgaacgtatctgagctcggctcgactcga 36543369  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 79764 - 79818
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||| |||||  |||||||||| || |||||| ||||||||||    
T  79764 gctggaaatgagtcgaatcgaatcgaacctgtctaagttcggctcgactcgataa 79818  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 447 - 497
Target Start/End: Original strand, 22183771 - 22183821
Alignment:
Q  447 gaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||| ||||||||||| |||||||||||||||||| | |||| |||||    
T  22183771 gaaatgaatcgagtcgaaccgaacctgtctgagctcggatcgacttgataa 22183821  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 25133937 - 25133991
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||   ||| ||||||||||||| || ||||||||||    
T  25133937 gctggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataa 25133991  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 48977008 - 48977062
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| ||| ||| |||| ||||||| || |||||||    
T  48977008 gctggaaatgagtcgagtcgaaccgaatctgcctgaactcggctcgattcgataa 48977062  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 55892807 - 55892753
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||  ||| || |||||||||| || ||||||||||    
T  55892807 gctggaaatgagtcgagtcgaatcgaatctatctgagctcgactcgactcgataa 55892753  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 48732092 - 48732039
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgata 496  Q
    |||||||||||||||||||||  |||||  || ||||||||||| |||||||||    
T  48732092 gctggaaatgagtcgagtcgagttgaactcgtgtgagctcggctcgactcgata 48732039  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 28266875 - 28266835
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcg 483  Q
    |||| ||||||||||||||||| ||||| ||||||||||||    
T  28266875 gctgaaaatgagtcgagtcgaattgaacatgtctgagctcg 28266835  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 40797160 - 40797212
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||   ||| ||||||||||||| || ||||||||||    
T  40797160 tggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataa 40797212  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 53369068 - 53369120
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||| ||| ||| ||||| ||||||  |||||||||    
T  53369068 tggaaatgagtcgagtcgaaccgaatctgcctgagttcggctcaactcgataa 53369120  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 493
Target Start/End: Original strand, 54742089 - 54742137
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcg 493  Q
    |||||||||||||| |||||   |||||||||||||||| |||||||||    
T  54742089 tggaaatgagtcgattcgaatcaaacctgtctgagctcgacttgactcg 54742137  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 36538081 - 36538135
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36538081 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggctcgactcgataa 36538135  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 20986069 - 20986122
Alignment:
Q  444 ctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  20986069 ctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataa 20986122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 33830896 - 33830948
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  33830896 tggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataa 33830948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 27633146 - 27633200
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| |||| |||||    
T  27633146 gctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgacttgataa 27633200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 26435771 - 26435825
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||| |||||||||||||||||| ||| |||||||||||||||| || |||||||    
T  26435771 gctgaaaatgagtcgagtcgaaccgaatctgtctgagctcggctcgattcgataa 26435825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 499
Target Start/End: Complemental strand, 33164688 - 33164632
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataaaa 499  Q
    ||||||||||||||||||||||| ||| ||||||||  | |||| ||||||||||||    
T  33164688 gctggaaatgagtcgagtcgaaccgaatctgtctgaatttggctcgactcgataaaa 33164632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 44741430 - 44741378
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||| |||| |||| |||||||||||||||||||| |||| |||||    
T  44741430 tggaaatgagttgagttgaaccgaacctgtctgagctcggctcgacttgataa 44741378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Complemental strand, 34116888 - 34116851
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctc 482  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  34116888 tggaaatgagtcgagtcgaatcgaacctgtctgagctc 34116851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 3805509 - 3805455
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  3805509 gctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataa 3805455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 32157521 - 32157467
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  32157521 gctggaaatgagtcgagtcgaactgaacctgtctgggctcggctcgactcgataa 32157467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 38523386 - 38523335
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcga 494  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  38523386 gctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcga 38523335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 29322067 - 29322121
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||    
T  29322067 gctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataa 29322121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 1841113 - 1841059
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||||  |||||||||||||||| || ||||||||||    
T  1841113 gctggaaatgagtcgagtcgaaccaaacctgtctgagctcgactcgactcgataa 1841059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 27905484 - 27905538
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| |||| | ||||||||||||| |||| |||||    
T  27905484 gctggaaatgagtcgagtcgaaccgaacttatctgagctcggctcgacttgataa 27905538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 448 - 497
Target Start/End: Original strand, 18879629 - 18879678
Alignment:
Q  448 aaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||| ||| ||||||||| |||||| ||||||||||    
T  18879629 aaatgagtcgagtcgaaccgaatctgtctgagttcggctcgactcgataa 18879678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 483
Target Start/End: Original strand, 10493383 - 10493423
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcg 483  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  10493383 gctggaaatgagtcgagtcgaatcgaacctgtctgagctcg 10493423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 499
Target Start/End: Original strand, 22921442 - 22921498
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataaaa 499  Q
    ||||||||||||||||||||||  || |||||||||||||| ||  |||||||||||    
T  22921442 gctggaaatgagtcgagtcgaatcgagcctgtctgagctcgactccactcgataaaa 22921498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 444 - 497
Target Start/End: Complemental strand, 666351 - 666298
Alignment:
Q  444 ctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  666351 ctggaaatgagtcgagtcgaaccgaacatgtctgagctcggcttgactcgataa 666298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 437 - 497
Target Start/End: Original strand, 26215715 - 26215775
Alignment:
Q  437 gctatagctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||| |||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||    
T  26215715 gctagagctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataa 26215775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 5776701 - 5776647
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||    
T  5776701 gctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataa 5776647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 15433633 - 15433687
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||||||||||    
T  15433633 gctggaaatgagtcgagtcgaaccaaacctgcctgagctcggcttgactcgataa 15433687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 36926413 - 36926467
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  36926413 gctggaaatgagtcgagtcgaatcgaacctgtctgagctcggctcgactcgataa 36926467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 7443835 - 7443887
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||| ||| |||||||||||||||| ||||||||||    
T  7443835 tggaaatgagtcgagtcgaaccgaatctgtctgagctcggctcgactcgataa 7443887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 43052286 - 43052340
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||| ||||||||||    
T  43052286 gctggaaatcagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataa 43052340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 45174641 - 45174695
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||| |||||||||||||||||| |||||||||||||||||||| ||||| ||||    
T  45174641 gctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcaataa 45174695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 444 - 497
Target Start/End: Complemental strand, 5795629 - 5795576
Alignment:
Q  444 ctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||  ||||||| |||||||||||| ||||||||||    
T  5795629 ctggaaatgagtcgagtcgaatcgaacctgcctgagctcggctcgactcgataa 5795576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 3931483 - 3931431
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||| ||||| ||| |||||||||||||||||||| ||||||||||    
T  3931483 tggaaatgagttgagtccaaccgaacctgtctgagctcggctcgactcgataa 3931431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 37333703 - 37333755
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||| ||||||| ||||||| |||| ||||||||||    
T  37333703 tggaaatgagtcgagtcgaaccgaacctgcctgagcttggctcgactcgataa 37333755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 388431 - 388485
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| |||| || |||||||||| | ||||||||||    
T  388431 gctggaaatgagtcgagtcgaaccgaacttgcctgagctcggttcgactcgataa 388485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 493
Target Start/End: Original strand, 37106149 - 37106200
Alignment:
Q  442 agctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcg 493  Q
    |||||||||||||||||||||||  ||||||||||||| ||| || ||||||    
T  37106149 agctggaaatgagtcgagtcgaatcgaacctgtctgagttcgactcgactcg 37106200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 493
Target Start/End: Complemental strand, 42012315 - 42012264
Alignment:
Q  442 agctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcg 493  Q
    |||||||||||||||||||||||  |||| |||||||||||| || ||||||    
T  42012315 agctggaaatgagtcgagtcgaatcgaacttgtctgagctcgactcgactcg 42012264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 445 - 499
Target Start/End: Complemental strand, 223077 - 223023
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataaaa 499  Q
    ||||||||||| |||||| |  ||||||||||||||| |||| ||||||||||||    
T  223077 tggaaatgagttgagtcggatcgaacctgtctgagcttggctcgactcgataaaa 223023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 481
Target Start/End: Original strand, 17608032 - 17608070
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagct 481  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  17608032 gctggaaatgagtagagtcgaattgaacctgtctgagct 17608070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 30918934 - 30918988
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||| ||||||||||| |||||| |||||||||| ||  |||||||||    
T  30918934 gctggaaatgaatcgagtcgaaccgaacctatctgagctcgactcaactcgataa 30918988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 42071524 - 42071578
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||| ||||||||||||||||||  ||| ||||||||||||||| ||||| ||||    
T  42071524 gctgaaaatgagtcgagtcgaaccaaacatgtctgagctcggctcgactcaataa 42071578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 497
Target Start/End: Complemental strand, 17026133 - 17026080
Alignment:
Q  444 ctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||   |||| |||||||||||| || ||||||||||    
T  17026133 ctggaaatgagtcgagtcgagtcgaacttgtctgagctcgactcgactcgataa 17026080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 489
Target Start/End: Original strand, 32239473 - 32239518
Alignment:
Q  444 ctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttga 489  Q
    ||||||||||||||||||||| |||| |||| |||||||| |||||    
T  32239473 ctggaaatgagtcgagtcgaattgaatctgtttgagctcgacttga 32239518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 27232519 - 27232479
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcg 483  Q
    ||||||||||||||||||||||  ||| |||||||||||||    
T  27232519 gctggaaatgagtcgagtcgaatcgaatctgtctgagctcg 27232479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 6998581 - 6998634
Alignment:
Q  444 ctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  6998581 ctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataa 6998634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 7957058 - 7957112
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  7957058 gctggaaatgagtcgagtcgacccgaacctgtctgagctcggctcgactcgataa 7957112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 444 - 497
Target Start/End: Complemental strand, 4442130 - 4442077
Alignment:
Q  444 ctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||| ||||||||||||||||  || ||||||||||    
T  4442130 ctggaaatgagtcgagtcgaaccgaacctgtctgagctcaactcgactcgataa 4442077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 18961849 - 18961903
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||| ||  ||||||| |||||||||||| ||||||||||    
T  18961849 gctggaaatgagtcgagtcaaatcgaacctgcctgagctcggctcgactcgataa 18961903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 7436704 - 7436758
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||| |||| ||||||||||||  ||||||||||||||||| || ||||||||||    
T  7436704 gctgaaaataagtcgagtcgaatcgaacctgtctgagctcgactcgactcgataa 7436758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 447 - 497
Target Start/End: Original strand, 10346220 - 10346270
Alignment:
Q  447 gaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||| |||||||| |||||||| ||||||||||| || |||||||    
T  10346220 gaaatgagtcaagtcgaaccgaacctgtttgagctcggctcgattcgataa 10346270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 10962558 - 10962518
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcg 483  Q
    ||||||||||||||||||||||  |||||| ||||||||||    
T  10962558 gctggaaatgagtcgagtcgaatcgaacctatctgagctcg 10962518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 443 - 496
Target Start/End: Original strand, 52198780 - 52198833
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgata 496  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  52198780 gctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgata 52198833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 39471215 - 39471161
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  39471215 gctggaaatgagtcgagtcgaaccgaacctgtctgaactcggctcgactcgataa 39471161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 41609318 - 41609372
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||    
T  41609318 gctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataa 41609372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 497
Target Start/End: Complemental strand, 38644365 - 38644306
Alignment:
Q  438 ctatagctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||||||| |||| |||||    
T  38644365 ctatggctggaaatgagtggagtcgaaccgaacctgtctgagctcggctcgactagataa 38644306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 39133782 - 39133836
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||| |||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  39133782 gctgaaaatgattcgagtcgaactgaacctgtctgagctcagctcgactcgataa 39133836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 499
Target Start/End: Original strand, 32688567 - 32688619
Alignment:
Q  447 gaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataaaa 499  Q
    |||||||||||||| |||| ||| |||||||||||||||| ||||||||||||    
T  32688567 gaaatgagtcgagttgaaccgaatctgtctgagctcggctcgactcgataaaa 32688619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 486
Target Start/End: Complemental strand, 23207036 - 23206993
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggct 486  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  23207036 gctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggct 23206993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 5418047 - 5418101
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||   |||| |||||||| |||||||||||||||||    
T  5418047 gctggaaatgagtcgagtcgagtcgaacttgtctgagttcggcttgactcgataa 5418101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 30740736 - 30740790
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| |||| ||||||||||   |||||||||||||    
T  30740736 gctggaaatgagtcgagtcgaaccgaacttgtctgagctttacttgactcgataa 30740790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 9413400 - 9413346
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||||||||| |||||||||||| || ||||||||||    
T  9413400 gctggaaatgagtcgagtcgaactgaacttgtctgagctcgactcgactcgataa 9413346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 22930979 - 22930940
Alignment:
Q  444 ctggaaatgagtcgagtcgaactgaacctgtctgagctcg 483  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  22930979 ctggaaatgagtcgagtcgaaccgaacctgtctgaactcg 22930940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 493
Target Start/End: Complemental strand, 27189689 - 27189639
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcg 493  Q
    ||||||||||||||||||||||  |||| |||||||||||| || ||||||    
T  27189689 gctggaaatgagtcgagtcgaatcgaacttgtctgagctcgactcgactcg 27189639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 497
Target Start/End: Original strand, 11161087 - 11161136
Alignment:
Q  448 aaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||| | ||||| ||||||||||||  |||||||||    
T  11161087 aaatgagtcgagtcgaaccggacctgcctgagctcggctccactcgataa 11161136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 493
Target Start/End: Complemental strand, 33280772 - 33280724
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcg 493  Q
    ||||||||||||||||||||  ||||||||||||| ||| || ||||||    
T  33280772 tggaaatgagtcgagtcgaatcgaacctgtctgagttcgactcgactcg 33280724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Original strand, 34515559 - 34515599
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcg 483  Q
    ||||||||||||||||||||||  |||||| ||||||||||    
T  34515559 gctggaaatgagtcgagtcgaatcgaacctatctgagctcg 34515599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 18714 - 18768
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||    
T  18714 gctggaaatgagtcgagtcgaaccgaatctgtttgagctcggctcgactcgataa 18768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 24470650 - 24470596
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||  |||||||||    
T  24470650 gctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcaactcgataa 24470596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 483
Target Start/End: Original strand, 44595833 - 44595873
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcg 483  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  44595833 gctggaaatgagtcgagtcgaaccgaacctgtctgagctcg 44595873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 486
Target Start/End: Complemental strand, 37441954 - 37441911
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggct 486  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  37441954 gctggaaatgagtcgagtcgaaccgaacctgcctgagctcggct 37441911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 29678240 - 29678186
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||  ||||||||||||||| | || ||||||||||    
T  29678240 gctggaaatgagtcgagtcgaatcgaacctgtctgagcttgactcgactcgataa 29678186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 32179337 - 32179391
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| |||| || |||||||||||| || |||||||    
T  32179337 gctggaaatgagtcgagtcgaaccgaacttgcctgagctcggctcgattcgataa 32179391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 36418524 - 36418578
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||  ||| ||| |||||||||||| ||||||||||    
T  36418524 gctggaaatgagtcgagtcgaatcgaatctgcctgagctcggctcgactcgataa 36418578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 47603545 - 47603491
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||  |||||||||    
T  47603545 gctggaaatgagtcgagtcgaaccgaacctgcctgagttcggctcaactcgataa 47603491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 493
Target Start/End: Complemental strand, 14579167 - 14579117
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcg 493  Q
    ||||||||||||||||||||||  |||||||| |||||||| || ||||||    
T  14579167 gctggaaatgagtcgagtcgaatcgaacctgtatgagctcgactcgactcg 14579117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 493
Target Start/End: Original strand, 23916135 - 23916185
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcg 493  Q
    ||||||||||||||||||||||  |||||||||| |||||| || ||||||    
T  23916135 gctggaaatgagtcgagtcgaatcgaacctgtctaagctcgactcgactcg 23916185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 28005739 - 28005793
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||   |||||| |||||||||| || ||||||||||    
T  28005739 gctggaaatgagtcgagtcgagtcgaacctctctgagctcgactcgactcgataa 28005793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 35309012 - 35309066
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    ||||||||||||| ||||||||| ||||||  |||||||||| | ||||||||||    
T  35309012 gctggaaatgagttgagtcgaaccgaacctacctgagctcggttcgactcgataa 35309066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 38061755 - 38061701
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||||   |||||||||||||||||  | ||||||||||    
T  38061755 gctggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactcgataa 38061701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 5205246 - 5205206
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcg 483  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  5205246 gctggaaatgagtcgagtcgagtcgaacctgtctgagctcg 5205206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 24575306 - 24575358
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||   |||||||||||||||||  |||| |||||||    
T  24575306 tggaaatgagtcgagtcgagtcgaacctgtctgagctcgatttgaatcgataa 24575358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 45654501 - 45654449
Alignment:
Q  445 tggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||||||||||||||||||   ||||||| ||||||||| || ||||||||||    
T  45654501 tggaaatgagtcgagtcgagtcgaacctgcctgagctcgactcgactcgataa 45654449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 6529 - 6475
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcggcttgactcgataa 497  Q
    |||| ||||||||||||||||| |||||||| ||||||||| || ||||||||||    
T  6529 gctgaaaatgagtcgagtcgaattgaacctgcctgagctcgactcgactcgataa 6475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 483
Target Start/End: Original strand, 16496 - 16536
Alignment:
Q  443 gctggaaatgagtcgagtcgaactgaacctgtctgagctcg 483  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  16496 gctggaaatgagtcgagtcgaatcgaacctgtctgagctcg 16536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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