View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0021-INSERTION-3 (Length: 319)
Name: NF0021-INSERTION-3
Description: NF0021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0021-INSERTION-3 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 17516528 - 17516824
Alignment:
| Q |
8 |
atctagcaaaccatttaaattgcgattattaaaacataatcagttaagaaaatatgacaccggagttctcgcttctctcacctcatccgcgcttttccgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17516528 |
atctagcaaaccatttaaattgcgattattaaaacataatcagttaagaaaatatgacaccggagttctcgcttctctcacctcatccacgcttttccgg |
17516627 |
T |
|
| Q |
108 |
tgaccttccatctctccggtgatgctccgatgaggcttttttgatcgtttttctttgttcttgttgtggatccgtttcagatcctcgttttccctctctt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17516628 |
tgaccttccatctctccggtgatgctccgatgaggcttttttgatcgtttttctttgttcttgttgtggatccgtttcagatcctcgtcttccctctctt |
17516727 |
T |
|
| Q |
208 |
tgctccatcaatttcatgtgtttctagctttttagtttgctgcagatctgttcctcctgtgttttccggtttggttctttccggtgggttctgttat |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17516728 |
tgctccatcaatttcatgtgtttctagctttttagtttgctgcagatctgttcctcctgtgttttccggtttggttctttccggtgggttctgttat |
17516824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 39619474 - 39619169
Alignment:
| Q |
8 |
atctagcaaaccatttaaattgcgattattaaaacataatcagttaagaaaatatgacaccggagttctcgcttctctcacctcatccgcgcttttccgg |
107 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39619474 |
atctagcaaaccatttaaattgcgatcattaaaacataatcagttaagaaaatatgacaccggagttctcgcttctctcacctcatccgcgcttttccgg |
39619375 |
T |
|
| Q |
108 |
tgaccttccatctctccggtgatgctccgatgaggcttttttgatcgtttttctttgttcttgttgtggatccgtttcagatcctcgttttccctctctt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39619374 |
tgaccttccatctctccggtgatgctccgatgaggcttttttgatcgtttttctctgttcttgttgtggatccgtttcagatcctcgttttccctctctt |
39619275 |
T |
|
| Q |
208 |
tgctccatcaatttcatgtgtttctagctttttagtttgctgcagatctgttcctcctgtgttttccggtttggttctttccggtgggttctgttatatt |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39619274 |
tgctccatcaatttcatgtgtttctagctttttagtttgctgcagatttgttcctcctgtgttttccggtttggttctttccggtgggttctgttatgtt |
39619175 |
T |
|
| Q |
308 |
cttcga |
313 |
Q |
| |
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| |||| |
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|
| T |
39619174 |
cgtcga |
39619169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 52402816 - 52402511
Alignment:
| Q |
8 |
atctagcaaaccatttaaattgcgattattaaaacataatcagttaagaaaatatgacaccggagttctcgcttctctcacctcatccgcgcttttccgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52402816 |
atctagcaaaccatttaaattgcgattattaaaacataatcagttaagaaaatatgacaccggagttctcgcttctctcacctcatccgcgcttttccgg |
52402717 |
T |
|
| Q |
108 |
tgaccttccatctctccggtgatgctccgatgaggcttttttgatcgtttttctttgttcttgttgtggatccgtttcagatcctcgttttccctctctt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52402716 |
tgaccttccatctctccggtgatgctccgatgaggcttttttgatcgtttttctttgttcttgttgtggatccgtttcagatcctcgttttctctctctt |
52402617 |
T |
|
| Q |
208 |
tgctccatcaatttcatgtgtttctagctttttagtttgctgcagatctgttcctcctgtgttttccggtttggttctttccggtgggttctgttatatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| || |
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|
| T |
52402616 |
tgctccatcaatttcatgtgtttctagctttttagtttgctgcagatctgttcctcctgttttttccgatttggttctttccggtgggttctgttatgtt |
52402517 |
T |
|
| Q |
308 |
cttcga |
313 |
Q |
| |
|
| |||| |
|
|
| T |
52402516 |
cgtcga |
52402511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 152 - 285
Target Start/End: Original strand, 24610426 - 24610560
Alignment:
| Q |
152 |
tcgtttttctttgttcttgttgtggatccgtttcagatcctcgttttccctctctttgctccatcaatttcatgtgtttctagctttttagtttgctgca |
251 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
24610426 |
tcgtttttctctattctttttgtggatccgtttcaaatccatgttttccctatctttgctccatcaatttcaagtgtttctagctttttagtttgctgca |
24610525 |
T |
|
| Q |
252 |
gatctgttcctcctgtgtttt-ccggtttggttct |
285 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||| |
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|
| T |
24610526 |
gatatgttcctcctgtgttttcccggtttggttct |
24610560 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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