View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0021-INSERTION-4 (Length: 719)
Name: NF0021-INSERTION-4
Description: NF0021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0021-INSERTION-4 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0400 (1 HSPs) |
| | |
|
| [»] scaffold0365 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 693; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 7 - 719
Target Start/End: Original strand, 37025597 - 37026309
Alignment:
| Q |
7 |
atctctcaggcgaaatcccgtcaataaaaaacttgttgaacttagaaaagcttgttctctacggaaactctctttctggaccgattccttttgagttagg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37025597 |
atctctcaggcgaaatcccgtcaataaaaaacttgttgaacttagaaaagcttgttctctacggaaactctctttctggaccgattccttttgagttagg |
37025696 |
T |
|
| Q |
107 |
aacaatctcttctcttagaacaattaaattgttgcacaataatttttctggtgaaattccatcttccataggaaacttgaaaaacttgatgatacttcag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37025697 |
aacaatctcttctcttagaacaattaaattgttgcacaataatttttctggtgaaattccatcttccataggaaacttgaaaaacttgatgatacttcag |
37025796 |
T |
|
| Q |
207 |
cttagtaataatcaatttcttggatcaattccttccactattggaaacttgacaaaactcattcaattgtcaatttctgaaaacaaactttctggatcaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37025797 |
cttagtaataatcaatttcttggatcaattccttccactattggaaacttgacaaaactcattcaattgtcaatttctgaaaacaaactttctggatcaa |
37025896 |
T |
|
| Q |
307 |
ttccttcttcaataggaaacttgatcaatctagaaaggcttagtcttgcacaaaatcatctttctggacctattccttcaacctttggaaatttgaccaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37025897 |
ttccttcttcaataggaaacttgatcaatctagaaaggcttagtcttgcacaaaatcatctttctggacctattccttcaacctttggaaatttgaccaa |
37025996 |
T |
|
| Q |
407 |
actaacctttctattactttacacaaacaagcttaatggtagcattccaaaaacaatgaataacattaccaatttgcaaagtttacaactaagttccaat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |
|
|
| T |
37025997 |
actaacctttctattactttacacaaacaagcttaatggtagcattccaaaaacaatgaataacattaccaatttgcaaagtttgcaattaagctccaat |
37026096 |
T |
|
| Q |
507 |
gatttcactggccaattgccacatcaaatttgccttggtggttctcttagaaatttttctgctgataagaatcgtttcagtggttttgttccaagaagct |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37026097 |
gatttcactggccaattgccacatcaaatttgccttggtggttctcttagaaatttttctgctgataagaatcagttcagtggttttgttccaagaagct |
37026196 |
T |
|
| Q |
607 |
tgaagaattgttcaagccttcttagacttaaccttgcagaaaatatgttgattggaaatatttcagatgattttggtgtgtatccaaatttgagctacat |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37026197 |
tgaagaattgttcaagccttcttagacttaaccttgcagaaaatatgttgattggaaatatttcagatgattttggtgtgtatccaaatttgagctacat |
37026296 |
T |
|
| Q |
707 |
ttctttgagtgac |
719 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37026297 |
ttctttgagtgac |
37026309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 358 - 477
Target Start/End: Complemental strand, 9589049 - 9588930
Alignment:
| Q |
358 |
aaaatcatctttctggacctattccttcaacctttggaaatttgaccaaactaacctttctattactttacacaaacaagcttaatggtagcattccaaa |
457 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||| ||||||||| ||||| || || |||||| ||||||||| | ||| ||||| |||||||||| | |
|
|
| T |
9589049 |
aaaaccatctatctggacctattccttctacctctggaaattttaccaagctcacatttctactactttacatgaccaaacttaactctagcattccaca |
9588950 |
T |
|
| Q |
458 |
aacaatgaataacattacca |
477 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
9588949 |
agcaatgaataacattacca |
9588930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 15009981 - 15010021
Alignment:
| Q |
227 |
tggatcaattccttccactattggaaacttgacaaaactca |
267 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15009981 |
tggaccaattccttccactattggaaatttgacaaaactca |
15010021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 15010197 - 15010237
Alignment:
| Q |
227 |
tggatcaattccttccactattggaaacttgacaaaactca |
267 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15010197 |
tggaccaattccttccactattggaaatttgacaaaactca |
15010237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 15031079 - 15031119
Alignment:
| Q |
227 |
tggatcaattccttccactattggaaacttgacaaaactca |
267 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15031079 |
tggaccaattccttccactattggaaatttgacaaaactca |
15031119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 15016317 - 15016354
Alignment:
| Q |
232 |
caattccttccactattggaaacttgacaaaactcatt |
269 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
15016317 |
caattcctttcactattggaaacatgacaaaactcatt |
15016354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 5695 - 5728
Alignment:
| Q |
234 |
attccttccactattggaaacttgacaaaactca |
267 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
5695 |
attccttccactattggaaatttgacaaaactca |
5728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 6339 - 6372
Alignment:
| Q |
234 |
attccttccactattggaaacttgacaaaactca |
267 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
6339 |
attccttccactattggaaatttgacaaaactca |
6372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 504 times since January 2019
Visitors: 1096