View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0021-INSERTION-5 (Length: 411)
Name: NF0021-INSERTION-5
Description: NF0021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0021-INSERTION-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 411
Target Start/End: Original strand, 36857130 - 36857531
Alignment:
| Q |
8 |
cgttgaggtgccacacaattccttcacagtttttctgagaagtttattttgagctaagagtgtatcgattgtatcttagtcaatctaactttctttgctg |
107 |
Q |
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| T |
36857130 |
cgttgaggtgccacacaattccttcacagtttttctgag---tttattttgagctaagagtgtatcggttgtatcttagtcaatctaactttctttgctg |
36857226 |
T |
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| Q |
108 |
tgtttcctctgttgtactcagatttgtggtcgtctagtgccatggattctataatcttacagtatctacaacatattctggcacatcactgaccctattg |
207 |
Q |
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| T |
36857227 |
tgtttcctctgttgtactcagatttgtggtcgtctagtgccatggattctataatcttacagtatctacaacatattctggcacatcactgatcctattg |
36857326 |
T |
|
| Q |
208 |
ttgttgttcta-ttcatttctgaagatgtaaatttgagtggcatcatcaaaaccatgattagggcattttcttaacatagacttgtaatgttctcatacc |
306 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36857327 |
ttgttgttctaattcatttctgaagatgtaaatttgagtggcatcatcaaaaccatgattagggcattttcttaacatagacttgtaatgttctcatacc |
36857426 |
T |
|
| Q |
307 |
tcctagagggattctgttgtactttgggagaagacgactattgttggcatcttgtactttactttgaggataaaagcgattgatgaatttattctccagt |
406 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36857427 |
tcctagagggattctgttgtactttaggagaagacgactattgttggcatcttgtactttactttgaggataaaagcgattgatgaatttattctccagt |
36857526 |
T |
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| Q |
407 |
tcatt |
411 |
Q |
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| T |
36857527 |
tcatt |
36857531 |
T |
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