View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0021-INSERTION-6 (Length: 263)
Name: NF0021-INSERTION-6
Description: NF0021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0021-INSERTION-6 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 1316218 - 1316434
Alignment:
| Q |
15 |
ttgtaccaatttactctgtcacatgcttttacttattaaaattaattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaaga |
114 |
Q |
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| T |
1316218 |
ttgtaccaatttactctgtcacatgcttttacttattaaaattaattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaaga |
1316317 |
T |
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| Q |
115 |
ggtcgaaaaagcaatgaacgagttcaaaaggactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgtaattttacataaaca |
214 |
Q |
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| T |
1316318 |
ggtcgaaaaagtaatgaacgagttcaaaaggactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgcaattttacataaaca |
1316417 |
T |
|
| Q |
215 |
tattgtccagagcctaa |
231 |
Q |
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| T |
1316418 |
tattgtccagagcctaa |
1316434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 259
Target Start/End: Original strand, 1316474 - 1316505
Alignment:
| Q |
228 |
ctaaatttaaccaagataactagtttttccag |
259 |
Q |
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| T |
1316474 |
ctaaatttaaccaagataactagtttttccag |
1316505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 43483760 - 43483871
Alignment:
| Q |
30 |
ctgtcacatgcttttacttattaaaattaattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcgaaaaagcaat |
129 |
Q |
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| T |
43483760 |
ctgtcacatgcttttacttattaaaattaattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcgaaaaagtaat |
43483859 |
T |
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| Q |
130 |
gaacgagttcaa |
141 |
Q |
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| T |
43483860 |
gaatgagttcaa |
43483871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 43486463 - 43486549
Alignment:
| Q |
145 |
gactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgtaattttacataaacatattgtccagagcctaa |
231 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||| | || |||||||||||||||||||||||||||||||| |
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| T |
43486463 |
gactattgaagcaattaatgtatttgacttgacattaaaatcaaacaaacattgcaattttacataaacatattgtccagagcctaa |
43486549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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