View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0021-INSERTION-8 (Length: 529)

Name: NF0021-INSERTION-8
Description: NF0021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0021-INSERTION-8
NF0021-INSERTION-8
[»] chr1 (6 HSPs)
chr1 (8-454)||(52000581-52001025)
chr1 (486-528)||(52001323-52001365)
chr1 (486-528)||(28052235-28052277)
chr1 (486-528)||(40614854-40614896)
chr1 (435-467)||(28886109-28886141)
chr1 (435-467)||(50937779-50937811)
[»] chr6 (1 HSPs)
chr6 (434-473)||(22852330-22852369)
[»] chr5 (5 HSPs)
chr5 (427-473)||(32964125-32964171)
chr5 (486-528)||(3686703-3686745)
chr5 (486-528)||(6673177-6673219)
chr5 (486-528)||(15559579-15559621)
chr5 (435-467)||(34332484-34332516)
[»] chr8 (1 HSPs)
chr8 (435-473)||(9616081-9616119)
[»] chr7 (3 HSPs)
chr7 (486-528)||(6387371-6387413)
chr7 (491-528)||(3775874-3775911)
chr7 (435-467)||(46415010-46415042)
[»] chr2 (1 HSPs)
chr2 (491-528)||(7531654-7531691)
[»] chr3 (1 HSPs)
chr3 (435-467)||(17699036-17699068)


Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Original strand, 52000581 - 52001025
Alignment:
Q  8 aatttggtttgatcatctttactttaatgcatatagttgcttaattcgaagtttcaagcaatgttcatgtttacttactttgatgaacattttgtgttca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  52000581 aatttggtttgatcatctttactttaatgcatatagttgcttaattcgaagtttcaagcaatgttcatgtttac----tttgatgaacattttgtgttca 52000676  T
Q  108 atttcaaattcatttgcacaaacttttattatcatatcacttgtttaaaagaagaatgaatagagacgcaatgacaaaaacttctattatcattacactt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52000677 atttcaaattcatttgcacaaacttttattatcatatcacttgtttaaaagaagaatgaatagagacacaatgacaaaaacttctattatcattacactt 52000776  T
Q  208 gtttaaaagatgagtgaactgagacacttaatgtcgaagtaactgctttatttaaaagttcctacgaaaaatcatgactattcttaataaccatgtttgc 307  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52000777 gtttaaaagatgagtgaattgagaaacttaatgtcgaagtaactgctttatttaaaagttcctacgaaaaatcatgactattcttaataaccatgtttgc 52000876  T
Q  308 atccattgtactacattcatccctaattttggatccac---nnnnnnnnnaattnnnnnnngattggtcaatcgtgggaatcgaactcacgacctaattt 404  Q
    || ||||||||||| | |||||||||||||||||||||            ||||       |||||||||||| |||||||||||||| |||||||||||    
T  52000877 attcattgtactacctccatccctaattttggatccacttttttttttttaatt-aaaaaagattggtcaatcctgggaatcgaactcgcgacctaattt 52000975  T
Q  405 tggatccaaagtatgtggaagtttattatgtactacctccgtcccaaatt 454  Q
    ||||||||| ||||||||||||||| |||||||||||||||| |||||||    
T  52000976 tggatccaatgtatgtggaagtttactatgtactacctccgttccaaatt 52001025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 486 - 528
Target Start/End: Original strand, 52001323 - 52001365
Alignment:
Q  486 gtccatttttataagacctctttggcattttcaactacattaa 528  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  52001323 gtccatttttataagacttctttggcattttcaactacattaa 52001365  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 528
Target Start/End: Original strand, 28052235 - 28052277
Alignment:
Q  486 gtccatttttataagacctctttggcattttcaactacattaa 528  Q
    |||| |||||||||||||||||||  |||||||||||||||||    
T  28052235 gtccctttttataagacctctttgctattttcaactacattaa 28052277  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 528
Target Start/End: Complemental strand, 40614896 - 40614854
Alignment:
Q  486 gtccatttttataagacctctttggcattttcaactacattaa 528  Q
    |||||||||||||||||| |||||  |||||||||||||||||    
T  40614896 gtccatttttataagacccctttgctattttcaactacattaa 40614854  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 467
Target Start/End: Complemental strand, 28886141 - 28886109
Alignment:
Q  435 tactacctccgtcccaaattataagaccatttt 467  Q
    ||||||||||||||| |||||||||||||||||    
T  28886141 tactacctccgtccctaattataagaccatttt 28886109  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 467
Target Start/End: Original strand, 50937779 - 50937811
Alignment:
Q  435 tactacctccgtcccaaattataagaccatttt 467  Q
    ||||||||||||||| |||||||||||||||||    
T  50937779 tactacctccgtccctaattataagaccatttt 50937811  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 473
Target Start/End: Complemental strand, 22852369 - 22852330
Alignment:
Q  434 gtactacctccgtcccaaattataagaccattttaagatt 473  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  22852369 gtactacctccgtccctaattataagaccattttaagatt 22852330  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 473
Target Start/End: Original strand, 32964125 - 32964171
Alignment:
Q  427 ttattatgtactacctccgtcccaaattataagaccattttaagatt 473  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  32964125 ttattatatactacctccgtccctaattataagaccattttgagatt 32964171  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 528
Target Start/End: Complemental strand, 3686745 - 3686703
Alignment:
Q  486 gtccatttttataagacctctttggcattttcaactacattaa 528  Q
    |||||||||||||||||| |||||  |||||||||||||||||    
T  3686745 gtccatttttataagacccctttgttattttcaactacattaa 3686703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 528
Target Start/End: Complemental strand, 6673219 - 6673177
Alignment:
Q  486 gtccatttttataagacctctttggcattttcaactacattaa 528  Q
    |||| |||||||||||||||||||  |||||||||||||||||    
T  6673219 gtccctttttataagacctctttgttattttcaactacattaa 6673177  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 528
Target Start/End: Original strand, 15559579 - 15559621
Alignment:
Q  486 gtccatttttataagacctctttggcattttcaactacattaa 528  Q
    |||| |||||||||||||||||||| |||||||| ||||||||    
T  15559579 gtccttttttataagacctctttggtattttcaagtacattaa 15559621  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 467
Target Start/End: Complemental strand, 34332516 - 34332484
Alignment:
Q  435 tactacctccgtcccaaattataagaccatttt 467  Q
    ||||||||||||||| |||||||||||||||||    
T  34332516 tactacctccgtccctaattataagaccatttt 34332484  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 9616119 - 9616081
Alignment:
Q  435 tactacctccgtcccaaattataagaccattttaagatt 473  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  9616119 tactacatccgtccctaattataagaccattttaagatt 9616081  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 528
Target Start/End: Original strand, 6387371 - 6387413
Alignment:
Q  486 gtccatttttataagacctctttggcattttcaactacattaa 528  Q
    |||| |||||||||||||||||||  |||||||||||||||||    
T  6387371 gtccctttttataagacctctttgttattttcaactacattaa 6387413  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 528
Target Start/End: Original strand, 3775874 - 3775911
Alignment:
Q  491 tttttataagacctctttggcattttcaactacattaa 528  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  3775874 tttttataagacctctttggtattttcaagtacattaa 3775911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 467
Target Start/End: Complemental strand, 46415042 - 46415010
Alignment:
Q  435 tactacctccgtcccaaattataagaccatttt 467  Q
    ||||||||||||||| |||||||||||||||||    
T  46415042 tactacctccgtccctaattataagaccatttt 46415010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 528
Target Start/End: Original strand, 7531654 - 7531691
Alignment:
Q  491 tttttataagacctctttggcattttcaactacattaa 528  Q
    |||||||||||||||||||  |||||||||||||||||    
T  7531654 tttttataagacctctttgctattttcaactacattaa 7531691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 467
Target Start/End: Complemental strand, 17699068 - 17699036
Alignment:
Q  435 tactacctccgtcccaaattataagaccatttt 467  Q
    ||||||||||||||| |||||||||||||||||    
T  17699068 tactacctccgtccctaattataagaccatttt 17699036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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